Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2413 |
Symbol | |
ID | 7970457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2578410 |
End bp | 2579132 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792996 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_002944306 |
Protein GI | 239815396 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.311436 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCCT CCGCCCTGCA AGCACTTTCC GCCCGCGCAC CGCGCAGCGA CGGCGTCGAA GCACGCCAGC GCCTGCTCTA CGCCGCCCTC GCGCTGTTCG CCGCCAATGG CTTCGCCAAG ACCTCGACCC GCGAGATCGC GCGCGCCGCG GGCGTGAACA TCTCGGCCAT CAGCTACTAC TTCGGCGACA AGGCCGGGCT GTATGCCGCC ACCTTCGGCG AGCCGATGGG CGGCAATGCG GGCGATTTCA TCTCGCTCTA TGCCGCGCCC GAGCTGCCGC TGGAAGAGGC GCTGCAGATC TTCTTCACGC GCATGATCGA GCCGCTCAAG CAGGGAGAGA TCGTGCGCCA GTGCATCCAG CTGCACCTGC GCGAAATGCT CGAGCCGACC AGCCAGTGGG CCGAGGAGAT GGAGCGCGAC ATCAAGGGTC CGCACAATGC CATTGCGCGC ATCCTGTGCC GGCGCCTGGG CCTCGCGCGG CCCGACGACG ACGTGCACCG CCTGAGCTTT GCCATCACGG GCCTGGCGAT GCAGCTTTTC GTGAGCCAGG ACCTCGTCGA GGCGATACGC CCCTCCCTGC TGAACACGCC GCGCAGCGTG GACACCTGGG CGCAGCGCCT CACGGGCTAT GCCGTTGCAC TGGTCGAGGC CGAAGCCCTG CGCCGCCAAA CCGCCGCCAA GCCCGCGGCC GCGCCCGCCC GTTCCGGGAG AAAGAAGACA TGA
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Protein sequence | MSASALQALS ARAPRSDGVE ARQRLLYAAL ALFAANGFAK TSTREIARAA GVNISAISYY FGDKAGLYAA TFGEPMGGNA GDFISLYAAP ELPLEEALQI FFTRMIEPLK QGEIVRQCIQ LHLREMLEPT SQWAEEMERD IKGPHNAIAR ILCRRLGLAR PDDDVHRLSF AITGLAMQLF VSQDLVEAIR PSLLNTPRSV DTWAQRLTGY AVALVEAEAL RRQTAAKPAA APARSGRKKT
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