Gene Vapar_2413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2413 
Symbol 
ID7970457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2578410 
End bp2579132 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content69% 
IMG OID644792996 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002944306 
Protein GI239815396 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.311436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCT CCGCCCTGCA AGCACTTTCC GCCCGCGCAC CGCGCAGCGA CGGCGTCGAA 
GCACGCCAGC GCCTGCTCTA CGCCGCCCTC GCGCTGTTCG CCGCCAATGG CTTCGCCAAG
ACCTCGACCC GCGAGATCGC GCGCGCCGCG GGCGTGAACA TCTCGGCCAT CAGCTACTAC
TTCGGCGACA AGGCCGGGCT GTATGCCGCC ACCTTCGGCG AGCCGATGGG CGGCAATGCG
GGCGATTTCA TCTCGCTCTA TGCCGCGCCC GAGCTGCCGC TGGAAGAGGC GCTGCAGATC
TTCTTCACGC GCATGATCGA GCCGCTCAAG CAGGGAGAGA TCGTGCGCCA GTGCATCCAG
CTGCACCTGC GCGAAATGCT CGAGCCGACC AGCCAGTGGG CCGAGGAGAT GGAGCGCGAC
ATCAAGGGTC CGCACAATGC CATTGCGCGC ATCCTGTGCC GGCGCCTGGG CCTCGCGCGG
CCCGACGACG ACGTGCACCG CCTGAGCTTT GCCATCACGG GCCTGGCGAT GCAGCTTTTC
GTGAGCCAGG ACCTCGTCGA GGCGATACGC CCCTCCCTGC TGAACACGCC GCGCAGCGTG
GACACCTGGG CGCAGCGCCT CACGGGCTAT GCCGTTGCAC TGGTCGAGGC CGAAGCCCTG
CGCCGCCAAA CCGCCGCCAA GCCCGCGGCC GCGCCCGCCC GTTCCGGGAG AAAGAAGACA
TGA
 
Protein sequence
MSASALQALS ARAPRSDGVE ARQRLLYAAL ALFAANGFAK TSTREIARAA GVNISAISYY 
FGDKAGLYAA TFGEPMGGNA GDFISLYAAP ELPLEEALQI FFTRMIEPLK QGEIVRQCIQ
LHLREMLEPT SQWAEEMERD IKGPHNAIAR ILCRRLGLAR PDDDVHRLSF AITGLAMQLF
VSQDLVEAIR PSLLNTPRSV DTWAQRLTGY AVALVEAEAL RRQTAAKPAA APARSGRKKT