| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2334 |
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| Symbol | |
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| ID | 7971192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2498155 |
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| End bp | 2499189 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792916 |
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| Product | putative signal peptide protein |
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| Protein accession | YP_002944227 |
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| Protein GI | 239815317 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.643163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCACC GCAGAACCCT CATGACAGTC TCCGCAGTCG CTGCGGCAAC CATTGCGTTG
CCGCGGGTCT TTGCGCAAGC CAAGCTCGAG AAGACGAAGA TTTCCATTGC AGTGGGCGGC
AAGGCGGCGT TCTACTATTT GCCGCTCACC ATCTCCGAAC AGCTCGGCTA CTTCAAGGCC
GAAGGCCTCG ACGTCGAGAT CTCCGATTTT GCAGGCGGCG CACGCGCGCT GCAGGCTGTG
GTGGGCGGAT CGGCGGACGT GTGCTCCGGC GCCTACGAGC ACACCATCAA CCTGCAGGCC
AAGAACCAGT TCTTCCAGGC CTTCGTGCTG CAGGGCCGTG CGCCGCAGAT CGCGGTGGGC
GTGTCGACCA AGAACATGGC GGGCTACACC GGCATTTCCG ATCTCAAGGG CAGGAAGATC
GGCGTCTCGG CGCCGGGCTC CTCGACCAAC ATGGTGGCCA ACCTGGTGCT GTCGCGCGGC
GGCCTCAAGG CCAGCGACGT GAGCTACATC GGCGTGGGCG TGGCGGCCGG CGCGCTCACG
GCGCTGCGCT CGGGCCAGAT CGACGCCATC AGCAACACCG ACCCCGTCAT GACCATGCTC
GAGCAGAAGG GCGACGTGAA GATCATCAGC GACACGCGCA CGCTCAAGGG CACGCAGCAG
GTGTTCGGCG GACCGATGCC CGCGGCCTGC CTCTACGCGC CGGTCGACTT CATCCAGAAG
AACCCCAACA CCTGCCAGGC ACTGGCCAAT GCCATCGTCC ACGGCCTCAA GTGGCTGCAG
ACAGCCGGCC CCGGCGACAT CATCAAGACG GTGCCCGAAA CCTACCTGCT CGGCGACCGC
GCGCTGTACC TTGCATCTTT CGACAAGGTG CGCGAATCGA TCGCCACCGA CGGCCTCGTG
CCGGCCGACG GTCCCAAGAC GGCGCTCACT GCCATCTCGA GCTTCGACAC GGCCGTGAAG
GCCGACAAGA TCGACCTCAT GAAGACCTAC ACCAACGATT TTGCTAGGCG CGCGAAGGAC
AGGTTCAAAG CCTGA
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| Protein sequence | MLHRRTLMTV SAVAAATIAL PRVFAQAKLE KTKISIAVGG KAAFYYLPLT ISEQLGYFKA
EGLDVEISDF AGGARALQAV VGGSADVCSG AYEHTINLQA KNQFFQAFVL QGRAPQIAVG
VSTKNMAGYT GISDLKGRKI GVSAPGSSTN MVANLVLSRG GLKASDVSYI GVGVAAGALT
ALRSGQIDAI SNTDPVMTML EQKGDVKIIS DTRTLKGTQQ VFGGPMPAAC LYAPVDFIQK
NPNTCQALAN AIVHGLKWLQ TAGPGDIIKT VPETYLLGDR ALYLASFDKV RESIATDGLV
PADGPKTALT AISSFDTAVK ADKIDLMKTY TNDFARRAKD RFKA
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