| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2182 |
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| Symbol | |
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| ID | 7973869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2332567 |
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| End bp | 2334381 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792770 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002944083 |
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| Protein GI | 239815173 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCCT CCGACATCGA CGACGCGGCA ATCGTGCCGG CCCAGCCCGA ATCCAAGAAA
AAGAAGGCGA AAGCGGCCGT GTCCGGCCCG TCTGCCGAAG CCGAAGCGGG CGTGCCCGCG
GCGGCCGCGG CCGGGGGCGA GGCGCCGAAG AAGCCGCGCG CCCCACGCCG CAAGAAGGTG
GTGGAGCCGG CGGCCGGGGA GGGCGAGCCC GCAGCAGCAC CTGCCGCACC CGCCGCGGCA
GCTGAAGCTT CCGAACCCGT GGCCCAGGTG GCCGATGCAG CGCCCGCCGC CGCACCAGTC
GCCGACGAAC CCGCCGCCGC CGCTGCGCCA GCCACATCCG TCGAACGCGC CGAAGAGAAT
GCGCGCGCTT CCTCCTACGA CGATGAAGAA GAGGATGAAG AGGAAGAAGA GCCCGACGAG
GAAGAGGACG ATCTCGACCG CGCACGCCGC GCCGCCGAGC GCGAGCAGCG CAACGCACCG
CCGCCCGAGC CGATCCGCTT CGCCGACGTC ATCTCGGGCC AGTTCGATGC CGACGAAGAG
AGCCCCGAAG TCCCGCCCCT CAAGCGCGTG CTGCTGCCCG AGGCCGACTC GCCCAAGCTG
CACAAGGTGC TGGCGCAGGC GGGCCTGGGC TCGCGGCTCG AAATGGAAGC GCTCATTCTG
CAGGGCCGCA TCTCGGTGAA CAACGAGCCG GCCCACATCG GCCAGCGCAT CCAGTATGGC
GACCAGGTCA AGATCAACGG CAAGCCGATC CGCTACCGCA TCGCGCCGCC GCCGCCGCGC
GTGATCGCCT ACCACAAGCC GGTGGGCGAG GTCGTGACGC ACGACGATCC GCAGAACCGG
CCCACGGTGT TCCGCAAGCT GCCGCGCCTG CAGCAGGGCA AGTGGCAATC GGTCGGCCGG
CTCGACCTGA ACACCGAGGG CCTGCTGCTG TTCAGCAGCT CCGGCGACCT GGCCAACCAG
CTGATGCATC CGCGCTTCGG CCTGGAGCGC GAATACGCCG TGCGCGTGCT CGGCGCGCTC
AATGCCGAGG AAAAGAAGAA GCTGCTCGAA GGCGTTCGCC TCGACGACGG CATGGCCCAG
TTCGGCACCA TCGAGGAGGG CGGCGGCGAG GGCTCCAACC ACTGGTACCG CGTCACCATC
TCCGAAGGCC GCAACCGCGA AGTGCGGCGC CTGTTCGAAT CGGTGGGCCA TGCGGTCAGC
CGGCTGATCC GCATCCGCTA CGGCGCCATG GTGCTGCCGC GCGGCTTGAA GCGCGGCGCC
TGGATGGAGC TCGACGAGCG CGACATCAGC GCGCTGTTCC AGGCCTCGGG CGGCGGCGCG
CCGCGTCCGC CGCAGCAGCA GCGCGGGCCG GGCCAGGAAG GTGCCGGCGG CGGTCGCAAC
GGACGCAACA AGAAGCGGCG CGGCAATCGC AACGCCGGCG GCGGACAGCA GCAGCCGCGC
GACATGCGCG ACGACGGCCG CGAGGCGCCC ATTCCCAATC CGCTCGGCGA CGGCCGCCCG
CCGCGCGGCG AGCGCGGCGG GCGTGGCAAC CGCGGCGGTG GCGGTGGCGG CGGCAACGCC
GGCATGCCGC CGCAGGGGCG CCGCGGCAAC AGCAACAACA ACCGCGGCAA CCGCCAGGGC
GAGGAGCGTC CGCCGAGCGG CGCGAACCAG CCCGACCCGA TGAAGACCTC GCTCGGCTAC
ATCGGCGCCG ACAGCTTCTC GCGCCAGCGC AAGGAGCAGC GGCAGGGTCC GGGGCGCCGC
GGCGGCGGCC CGGGTGGCGG CGGTGGCTTC GGTGGCCAGG GCGGCCCCGG CGGAAACCGG
CGCCGCGGGC GCTGA
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| Protein sequence | MSSSDIDDAA IVPAQPESKK KKAKAAVSGP SAEAEAGVPA AAAAGGEAPK KPRAPRRKKV
VEPAAGEGEP AAAPAAPAAA AEASEPVAQV ADAAPAAAPV ADEPAAAAAP ATSVERAEEN
ARASSYDDEE EDEEEEEPDE EEDDLDRARR AAEREQRNAP PPEPIRFADV ISGQFDADEE
SPEVPPLKRV LLPEADSPKL HKVLAQAGLG SRLEMEALIL QGRISVNNEP AHIGQRIQYG
DQVKINGKPI RYRIAPPPPR VIAYHKPVGE VVTHDDPQNR PTVFRKLPRL QQGKWQSVGR
LDLNTEGLLL FSSSGDLANQ LMHPRFGLER EYAVRVLGAL NAEEKKKLLE GVRLDDGMAQ
FGTIEEGGGE GSNHWYRVTI SEGRNREVRR LFESVGHAVS RLIRIRYGAM VLPRGLKRGA
WMELDERDIS ALFQASGGGA PRPPQQQRGP GQEGAGGGRN GRNKKRRGNR NAGGGQQQPR
DMRDDGREAP IPNPLGDGRP PRGERGGRGN RGGGGGGGNA GMPPQGRRGN SNNNRGNRQG
EERPPSGANQ PDPMKTSLGY IGADSFSRQR KEQRQGPGRR GGGPGGGGGF GGQGGPGGNR
RRGR
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