Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2180 |
Symbol | |
ID | 7973867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2330614 |
End bp | 2331597 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644792768 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_002944081 |
Protein GI | 239815171 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTCCCCG ACGCCGCCGA GTCCGACGAG GGCGCCGACC CGGTCGAATC CAGCGAACTG CGGCCCTTCA CCGTGGGCCC GACCGAGCAT GGCCAGCGGC TGGACCGCGC GCTGGCCGCC CTGGTGCCGG AATTTTCTCG CAACTATCTG CAACAGCTGA TCGAAGCCGG CGCCGTGGAG CTGCAGGGGC GCACCCTGCT GAAGGCTTCC GCCACCGTGC GCGCGGGGCA GACCGGCCAT ATCGAGCTGC GGCCGACGCC CCAGAGCCAG GCCTTCCGGC CCGAGCCGAT GGACATCGTC ACGGTGCACG AGGACGAGCA CCTGCGCATC ATCGACAAGC CGGCCGGCCT GGTGGTGCAT CCGGCGCCGG GCCACTGGAG CGGCACGCTG CTGAACGGCC TGCTCGCGCT CGACCCCAAG GCCGCGCTGC TGCCGCGCGC GGGCATCGTG CACCGGCTCG ACCGCGACAC CAGCGGGCTC ATGGTCGTGG CGCGCACCCG GGCCGCGATG GATGCCATGG TGGCGCTGAT CGCCGCGCGC GAAGTCAAGC GGCAATACCT CGCGCTCGGA CACAAGCCCT GGGCCGGCGC GGCAGCCCGG CAGGTCGACG CGCCCATCGG CCGCGATCCG CGCAACCGTT TGCGCATGGC CGTGGTCGAC CTCGAGCGCC ATGCCGGCAA GACGGCACGC ACGCTCATCG AGCGCCTGGA CAGCAACGCG CAGGCTTGTG CCGTGCGGTG CACGCTCGAA ACGGGCCGCA CGCACCAGAT CCGCGTGCAC ATGGCGTCGA TCGGGCATCC GCTCGTTGGC GATGCGCTCT ACGGCGGAGC GCCGGCCGCG GGGCTGGGGC GGCAGGCGCT GCACGCCTTC AGGCTCGCTT TCGTGCATCC CGTCACGCAA GCCGCGCTGG AACTGCGTTC ACTTCCGCCG GCCGACCTGG TTCAGGCGTT CCAGGCCCTG GGGCTGGATT ACAATCGCGC CTGA
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Protein sequence | MVPDAAESDE GADPVESSEL RPFTVGPTEH GQRLDRALAA LVPEFSRNYL QQLIEAGAVE LQGRTLLKAS ATVRAGQTGH IELRPTPQSQ AFRPEPMDIV TVHEDEHLRI IDKPAGLVVH PAPGHWSGTL LNGLLALDPK AALLPRAGIV HRLDRDTSGL MVVARTRAAM DAMVALIAAR EVKRQYLALG HKPWAGAAAR QVDAPIGRDP RNRLRMAVVD LERHAGKTAR TLIERLDSNA QACAVRCTLE TGRTHQIRVH MASIGHPLVG DALYGGAPAA GLGRQALHAF RLAFVHPVTQ AALELRSLPP ADLVQAFQAL GLDYNRA
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