Gene Vapar_2180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2180 
Symbol 
ID7973867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2330614 
End bp2331597 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content72% 
IMG OID644792768 
Productpseudouridine synthase, RluA family 
Protein accessionYP_002944081 
Protein GI239815171 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCCCCG ACGCCGCCGA GTCCGACGAG GGCGCCGACC CGGTCGAATC CAGCGAACTG 
CGGCCCTTCA CCGTGGGCCC GACCGAGCAT GGCCAGCGGC TGGACCGCGC GCTGGCCGCC
CTGGTGCCGG AATTTTCTCG CAACTATCTG CAACAGCTGA TCGAAGCCGG CGCCGTGGAG
CTGCAGGGGC GCACCCTGCT GAAGGCTTCC GCCACCGTGC GCGCGGGGCA GACCGGCCAT
ATCGAGCTGC GGCCGACGCC CCAGAGCCAG GCCTTCCGGC CCGAGCCGAT GGACATCGTC
ACGGTGCACG AGGACGAGCA CCTGCGCATC ATCGACAAGC CGGCCGGCCT GGTGGTGCAT
CCGGCGCCGG GCCACTGGAG CGGCACGCTG CTGAACGGCC TGCTCGCGCT CGACCCCAAG
GCCGCGCTGC TGCCGCGCGC GGGCATCGTG CACCGGCTCG ACCGCGACAC CAGCGGGCTC
ATGGTCGTGG CGCGCACCCG GGCCGCGATG GATGCCATGG TGGCGCTGAT CGCCGCGCGC
GAAGTCAAGC GGCAATACCT CGCGCTCGGA CACAAGCCCT GGGCCGGCGC GGCAGCCCGG
CAGGTCGACG CGCCCATCGG CCGCGATCCG CGCAACCGTT TGCGCATGGC CGTGGTCGAC
CTCGAGCGCC ATGCCGGCAA GACGGCACGC ACGCTCATCG AGCGCCTGGA CAGCAACGCG
CAGGCTTGTG CCGTGCGGTG CACGCTCGAA ACGGGCCGCA CGCACCAGAT CCGCGTGCAC
ATGGCGTCGA TCGGGCATCC GCTCGTTGGC GATGCGCTCT ACGGCGGAGC GCCGGCCGCG
GGGCTGGGGC GGCAGGCGCT GCACGCCTTC AGGCTCGCTT TCGTGCATCC CGTCACGCAA
GCCGCGCTGG AACTGCGTTC ACTTCCGCCG GCCGACCTGG TTCAGGCGTT CCAGGCCCTG
GGGCTGGATT ACAATCGCGC CTGA
 
Protein sequence
MVPDAAESDE GADPVESSEL RPFTVGPTEH GQRLDRALAA LVPEFSRNYL QQLIEAGAVE 
LQGRTLLKAS ATVRAGQTGH IELRPTPQSQ AFRPEPMDIV TVHEDEHLRI IDKPAGLVVH
PAPGHWSGTL LNGLLALDPK AALLPRAGIV HRLDRDTSGL MVVARTRAAM DAMVALIAAR
EVKRQYLALG HKPWAGAAAR QVDAPIGRDP RNRLRMAVVD LERHAGKTAR TLIERLDSNA
QACAVRCTLE TGRTHQIRVH MASIGHPLVG DALYGGAPAA GLGRQALHAF RLAFVHPVTQ
AALELRSLPP ADLVQAFQAL GLDYNRA