| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2135 |
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| Symbol | |
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| ID | 7973821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2280107 |
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| End bp | 2281033 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792722 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002944036 |
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| Protein GI | 239815126 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5006] Predicted permease, DMT superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACTC TCGCATCCCC CGCCCAAGCC GCATCCGGCT CCGCGCGCAC CGCGCTGCCG
CCGCTGCTGT GGCTCTGCCT GGCCGCCACC TGGGTGGTCT GGGGCTCGAC CTATCTCGCG
ATCAAGTACG CGCTGATCAG CTTTGCGCCG TTCCTGCAGA TGGGCTCGCG CTTCCTGTTC
GCGGGTGTGC TGCTCGCGGC CTGGATGCGT TGGCGCGGCG CGGCCTGGCC CTCGCGCCTG
CAGTGGCGCA ATGCCCTCGT GGTCGGCACG TTGATGCTCG GTGGCGGCAT GGGCGGCACG
GCCCATGCCG AAGTGTCGAT CGGCTCCGGG CTGGTGGTGG CCTTCATCGC GGTGGTGCCG
CTGCTGATTG CGCTGCTCAA CCTGATCTGG GGCGTGAAGC CGACGCGGCT GGAGGCGGCG
GGCATTGCGC TCGGGCTCAT CGGCGTGCTG ATGCTGACGC AGGGCAGCGG TTTCCAGTCG
TCGCCAGCAG GCCTGGCGGC AATTTCCATT GCCTGCATCT GCTGGTCGAT GGGCAGCGTG
CTGAGCCAGC GCAGCCTGCC GCTCGCGCCC GGCGCGATGG GTTTCGCGAG CGAAATGATC
TGCGGCGGCG TGGTGCTGCT GGTGCTCTCG GTGCTGTCGG GCGAACAGCT GGTGTGGCCA
CCGCAGCCCG AGGCGGCAGC TGCCTGGCTG TACCTCGTGG TGTTCGGCTC GCTGATCGCG
TTCAACGCCT ACATGGTGCT GCTCGCGAGG GCGCCCGCCG CCCTGGCCGC GAGCTACACC
TTCGTCAATC CGGTGATTGC GATGCTGCTG GGCGTGTGGA TTGCCAACGA GACCGTGACG
CGCTTCGAGT GGTATGCGGT GGCCGTGGTG CTGGCCGGTG TTCTGCTGCT GCTCTTCAAG
CGCCCGCAGA GGGCGAAAGA GAGCTGA
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| Protein sequence | MPTLASPAQA ASGSARTALP PLLWLCLAAT WVVWGSTYLA IKYALISFAP FLQMGSRFLF
AGVLLAAWMR WRGAAWPSRL QWRNALVVGT LMLGGGMGGT AHAEVSIGSG LVVAFIAVVP
LLIALLNLIW GVKPTRLEAA GIALGLIGVL MLTQGSGFQS SPAGLAAISI ACICWSMGSV
LSQRSLPLAP GAMGFASEMI CGGVVLLVLS VLSGEQLVWP PQPEAAAAWL YLVVFGSLIA
FNAYMVLLAR APAALAASYT FVNPVIAMLL GVWIANETVT RFEWYAVAVV LAGVLLLLFK
RPQRAKES
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