Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2069 |
Symbol | |
ID | 7972471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2214098 |
End bp | 2215654 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792662 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_002943976 |
Protein GI | 239815066 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTGC CAATCCATCT GACGCGCCGC CGTGCGCTCC AACTTTGTGC GGTCGGCCCG GCCGTTGCCG CATCGGCGGG CCTGCTGGCG CAGCCGGCGC TCTCGCCGCT GCAGATCGTC GGCCCCTGGG AATTAGGGGG CCTCGCCCCG GCCAACAGTG GCTACATCTT CACGCGCATG CAGATTGCTG AAACGCTGAT GGAGGCGCGC GAGGACGGCA CCCCGTTGCC TGGCTTGGCT GAACGCTGGG GAGTGTCGGC CGATGGGTTG GCATGGCGTT TCACGCTGCG TGCGACAGCG CGCTTTCACG ACGGCACGCC AGTGACAGCC GCCGCAGTCG TGCGCTGCCT GCAGGCCGCA CGCGTGGCCC CGGCGCTGCT CAGTCTGGCG CCGATCAAGT CGCTGGACGC CGAGGGTGCA GGTGTCGTCT TGATCAGGCT GGCGTCGCCC TACGGCGGAT TGCCAGCGCT GCTGGCGCAC AGCAGCACGA TGGTGCTCGC CCCGGCGAGC TACGGTCCCG ACGGCAGGGT GCGGACCATC GTTGGCAGCG GCCCCTACCG CGTGGTGTCG CTCGCACCGC CCCAGCATGT GGAGGCGGCT GCGTTCGACG GCTACGACGG CGCCAGGCCT GCCGTCGAGC GCGTGCGTTA CCTGGCGGCC GGCCGCGCCG AAACCCGTGC GCTGATGGCC GAGGGCGGAC AGGCCGATCT GGCCTACGGG CTCGACCCGG CAAGCCTCGT GCGACTGCGC AAGCGCGGCC AGGTTCGCGT CGATACGGTG ACGTTGCCAC GCACCGTGAT CCTCAAAGTC AATGCAGGTC TGCCGGCCTT GAAAGACCTG CGCGTGCGGC AGGCGCTCAG CCTGTGCATC GATCGGGCCG GCATTGCGAA GGCCTTGCTG CGTGACCCCG AGCTGGCGGC AACGCAACTC TTTCCTCCGA CGCTCAAGGC CTGGCACGAC CCCGCGCTGG CGCCATTGAC CCACGACCCC GCCGCTGCGG CGAGGCTTCT GGCCGAGGCC GGCTGGCGAC GGGCGGCCGA CGGCTTGCGC GACGCTTCGG GCCAGCCATT ACGCCTGTCG CTGCGGACCT TTCCCGATCG GCCGGAGTTG CCCGTCATCG CCTCCGCGCT GCAGGAGCAG TGGCGACAGG CTGGCATCGC GGTGCAGGTC GGCGTCGGCA ATTCGGGCGA CATTCCGCTG GGCCACCGCG ACGGCAGCCT GCAACTGGGC CTGGCCGCGC GCAACTACGC CACGGTGCCC GACCCCACGG GCACGCTGAT GCAGGATTTC GGGGCCTCGG GGGGCGACTG GGGCGCGATG GGCTGGACCA GCGATGCGCT GGTCAAGGCA CTTTCCGAGC TTTCGCTCGG CCCATCGTCG GCCGAGCGCA CGGCCAGGTT GCGCGCGCAG GTCGCGGCAG TGCTTCAGGC CGAATTGCCG GTGATCCCGA TCGCCTGGTA CCGCCAACAG GTGGCGGTCA GCCAGCGTGT CGCCGGTGTG AGCCTCGATC CGCTGGAACG GTCCTACCGG CTTACCGCGA TGAGGTGGAA CGCATGA
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Protein sequence | MTLPIHLTRR RALQLCAVGP AVAASAGLLA QPALSPLQIV GPWELGGLAP ANSGYIFTRM QIAETLMEAR EDGTPLPGLA ERWGVSADGL AWRFTLRATA RFHDGTPVTA AAVVRCLQAA RVAPALLSLA PIKSLDAEGA GVVLIRLASP YGGLPALLAH SSTMVLAPAS YGPDGRVRTI VGSGPYRVVS LAPPQHVEAA AFDGYDGARP AVERVRYLAA GRAETRALMA EGGQADLAYG LDPASLVRLR KRGQVRVDTV TLPRTVILKV NAGLPALKDL RVRQALSLCI DRAGIAKALL RDPELAATQL FPPTLKAWHD PALAPLTHDP AAAARLLAEA GWRRAADGLR DASGQPLRLS LRTFPDRPEL PVIASALQEQ WRQAGIAVQV GVGNSGDIPL GHRDGSLQLG LAARNYATVP DPTGTLMQDF GASGGDWGAM GWTSDALVKA LSELSLGPSS AERTARLRAQ VAAVLQAELP VIPIAWYRQQ VAVSQRVAGV SLDPLERSYR LTAMRWNA
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