| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2068 |
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| Symbol | |
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| ID | 7972470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2211928 |
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| End bp | 2214096 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792661 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002943975 |
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| Protein GI | 239815065 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.500479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGCTA TCCCTTCCGA ACGCGCGCAC AAACGCGTTC CCCTGTTTCG CCGCCTCCCT
CTCGCGCTGG CCGTCTCGGC GCTGTTTGCC GGACCGGCCA TCGCCCAGTC TTCCGATAGC
CCTGTCCAGG GCCAGCTGAA ACCCATCGAA GTGGTCGGCC GCGGCGAGTC GGGCACGTAC
CAAGCCGAAG AAGCCGCCGG CGCCAAGACG GACCTGCCGC TGCGCGAACT GCCGCAATCG
GTGCGCATCG TCACGCGCCA GGCCATCGAC GACCTGGGGG CCACCAAGCT CGATGACGTG
CTCGACTATG TCGGCGGCGT CTCGCGGCAG AACAACTTCG GCGGCCTCTG GGACAACATC
GCGATCCGCG GACTGCCCGG CAACGAGAAC ACCGGGATGG CGACGCTGCT CAACGGCTTT
TCCTCGAACC GGGGGTTCAA CGCGCCGCGC GATCTGGCGG GAGTGGAGCG CATCGAGTTC
CTCAAAGGCA GCGCGGCTGC GCTTTACGGC AGCAGTGAAC CCGGTGGCAC GCTGAACATC
GTCTCCAAAC GCCCATTGTG GACGGCGGCG AACTCGGTCG AGGCCTATGG GGGAAGCCAG
GGCCTCAAGC GAGGCGCTTT CGACAGCACC GGCCCGATCG GCGAGAACTT CGCCTACCGG
CTCAACGTGG CGGTGGAAGA CCGCAACAGC TTCCGCGACT TCGTGGGCGC CAAACGAGAG
GTCATTGCCC CGGCCTTCAC CTGGAAGCTC GGACGCGACA CGGTGCTGGA GTACGCGGGT
GAGTACCTGC GCCATGCCAC CCCGCTGGAC CGCGGTGTGG TGGCGGTCGA CAACCGGCTT
GGCGCCATTG CGCGCAACCG CTTCCTCGGC GAGCCGGCCG ACGGCGACGT GACAGTCAAG
AACCAGACGC ACCAGTTCAT CCTGTCCCAT GAATGGAATT CCACGTGGCG CAGCCGGGTA
GGCCTGTCGT ACCGCGAGAC TTCGCTGGAC GGTTTTTCCA CCGAGCCGAC TGCACTGCTG
GCCAACGGCA ACCTCACGCG GCAGCGGCGC TACCGCGACT ACAGCTCGCA CGACATTGCG
CTGCAGGCCG AACTGCAGGG CAATGTGAAG ACCGGCGCCA TCGAACACGA ACTCCTGTTC
GGCGTGGAGA GCTTCCGCTT CAGCATGGAT TCCCTGATGC TGCGGGCGAA TCCGACGACC
GCCAGGCCGT ATGCGATCAA CATCTACAAC CCGGTCTACG GCCAGCTTCA GCCGGTACCC
ACGGCCAACA CCGACACGCT GGAACGCCAG AACAATAACG CGTTCTACGT CCAGGACGCG
ATCAAGCTCT CGCCTGAATG GCGGCTCGTT GCGGGCGTGC GCGCCGACAA CTATCGCCAG
TCGCTGCTGA ATCGCAGAAA CAGCATCACG GCCATCCAGG AGCCCTCGTC GACCTCACCG
CGCATCGGTG TGAGCTGGCT GCCGACACCG CAGTGGACTT TCTACGCCAA TGCGGGCCGC
TCGTTCAGGC CCAACACGGG TTCCGACTTC GCCTCGAACG GCTTTGCGCC CGAGACGGGC
CGCGCGCTGG AACTCGGCAC CAAGTGGGAG AGCACGGACC AGCGCATGGG CGCCACCGCC
GCGCTCTTCG ACATCCGCAA GCGCAACGTG CTGACCTCCG ACCCCGTCAA CACCGGCTAT
TCGGTGGCGG CGGGCGAAAT CCGCAGCCGG GGCCTGGAGT TCGACTTCTT GGGCCAGGTC
ACGAAGAACT GGCGCGTCAA TGCCAGTCTG GTGCTCAACG ACGTGGAAAT CACGAAGGAC
AACACCCTGG AGGTCGGCGG CCGGCTGCTC AACGTGCCCC GGGTCAACGG CAGCGTGCTC
GCGGTCTACG AGGACGGCTT TTCCAACGGC CAGCGCTACG GCATCGGCGG CGGCTTCACC
CACATGGGCA AGCGCCTGGG CCAGGCCCGC ACGCAGGCTG AGGCGAACGC GGGAACTCCC
GCGTTCGACC TGCCGGCCTA CACCACCGCC AAGCTGGTTG CGTACTGGCG CCTCAACCCC
ACACTGCGTG TGACGCTCGA CGTCGACAAT CTTTTCGACA AGACCTACTA CACGAGTTCA
TACAGCCGCG TCTGGGTCAC ACCAGGTACG TCGCGCACCT TCACCCTCGG TCTACAGGCC
AAGTTCTGA
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| Protein sequence | MIAIPSERAH KRVPLFRRLP LALAVSALFA GPAIAQSSDS PVQGQLKPIE VVGRGESGTY
QAEEAAGAKT DLPLRELPQS VRIVTRQAID DLGATKLDDV LDYVGGVSRQ NNFGGLWDNI
AIRGLPGNEN TGMATLLNGF SSNRGFNAPR DLAGVERIEF LKGSAAALYG SSEPGGTLNI
VSKRPLWTAA NSVEAYGGSQ GLKRGAFDST GPIGENFAYR LNVAVEDRNS FRDFVGAKRE
VIAPAFTWKL GRDTVLEYAG EYLRHATPLD RGVVAVDNRL GAIARNRFLG EPADGDVTVK
NQTHQFILSH EWNSTWRSRV GLSYRETSLD GFSTEPTALL ANGNLTRQRR YRDYSSHDIA
LQAELQGNVK TGAIEHELLF GVESFRFSMD SLMLRANPTT ARPYAINIYN PVYGQLQPVP
TANTDTLERQ NNNAFYVQDA IKLSPEWRLV AGVRADNYRQ SLLNRRNSIT AIQEPSSTSP
RIGVSWLPTP QWTFYANAGR SFRPNTGSDF ASNGFAPETG RALELGTKWE STDQRMGATA
ALFDIRKRNV LTSDPVNTGY SVAAGEIRSR GLEFDFLGQV TKNWRVNASL VLNDVEITKD
NTLEVGGRLL NVPRVNGSVL AVYEDGFSNG QRYGIGGGFT HMGKRLGQAR TQAEANAGTP
AFDLPAYTTA KLVAYWRLNP TLRVTLDVDN LFDKTYYTSS YSRVWVTPGT SRTFTLGLQA
KF
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