| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2066 |
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| Symbol | |
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| ID | 7972468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2207687 |
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| End bp | 2209816 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792659 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002943973 |
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| Protein GI | 239815063 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCAA GCGACGAGAT CAACTTCATG AACTACACGA ATTCAATGCG CCGCAGGCTC
CTGGTCAACT CCTTCAAGCT CGGCCCGCTG CTCTGGGCAC CGACATGGGC CTTCGCAGCC
GATACGCCCG ATCAGGCCGT CTTCGCAGCC CCCGTTGCCG CACAGACCGA TAAGAACACG
GACAGTTCCG CACTCACGCT GGGCACCGTC AACATCCAGG CCACGGCCAG CGGACCGCTG
TCCGCGCGGC AGGTGTTCAG TTCGGTCGAC ATCTTGGGCG CCAGCGTGCT GGAAGACCAG
CACGTCGACT ACAGCTGGGA ATTGTTCTCT CGCGCACCGG GTGTGCAGGT CACGCAGTTC
AAGCAAGGCA CCGACGCGGG GCGTTTCTCG TTCCGCGGCT TCAACGGCGA AGGCCGCGTC
AATGCCGTCA AGCTGCTGAT CGACGGCATC CCGAGCAACG ACAACGCGGG CGGCATGCCG
TTTCTCGATG CGGTGTTCCC ACAGGACATC GAGGCCATCG AGATCGTGCG CGGCACCAAC
GACCCACGCT ATGGGCTGAA CAACATCGCG GGCAACGCGA ACGTCATCAC GCGCACGGGT
GGCAACCAGG GGCGCGCAAG CCTCACCCTC GGCAGCTTCG GCACCAAGGA GGTCGAGATT
TCCAAGGGCA TCGAGAGCGG CAACTGGAGC CAGAACTATT CGCTGGCCTA CCGCGATTCG
GACGGCTACC GCGACCATGC CGACGCGAGG AAGCTGGCCT TCTCGGGCAA GTGGTTCTAC
ACCAGCGACG ACGGTCGCTG GCGCGCCGGC GTCATCGCGC GCTACTACCG CAACAAGGCG
CTGGAGTCTG GTTACCTGAG CTACGACCAG GCCATGAGGA CGCCGCGCAG CTCGCCCGCG
TATGCATCGG CCGACCGCGG CGAGCGCGAG ACGGCGCAGC TCAGTGCGCA CCTGGACGGT
GAACTGACGA ACACCCTCTC ATGGTCGACC AAGGTCTATG CCAACCAGTA CGAGAACCGG
CGCTGGGTGC GCTTCTCCGC AGCGAGCGCC CAGCAGGAGC GCTACAACGA CGAGAAGCAG
CAGGGCGCGA TCACCTCTTT GACCTGGCGG CCCCAGGTCG GCTGGGCGCA CGAGTTCACG
CTGGAAGGCG GCCTCGACGC GCAGTGGCAG CACAACCTCG GCCAGCGCTA CCGCACCACC
GAGCGCGTGC GCACCTCGCA ATTTCGCGAC TGGGATTTCG ATCTCGACAC GCAGGGGGCC
TATGTGCAGG CGGTGATCCG TCCGGTCGAG GCCTTGAAGA TCGTGCCGGC CTTCCGGGTC
GACCACGTGG GCGGCCAGTT CACCGACCGG CTCGGCCGCA CCACCTCGCC GGTGCATGAC
TACGGGCTCA TCCAGCAGCC CAAGATCAGC GTGGCCTATG CGCTGAATCC GCAGGCGAGC
CTCTACGCCA ACTGGGGCCG CACCTTCCAG ATCGGCACCG GCATCGATGC CTACCGAACG
CAGGCGCGCA ACCTCCAACC GTCGATCAAC GACGGCTGGG AGGCCGGCGT CAAGTTCAAT
CCGCTGCCAT GGCTCGACGG GCGTGTCGCC TATTGGGAGC AGCGCGCATC CGGGGAAGTC
GCGCGCGTCC TGGGCGTCGA CGGGCTGCCG GACCCGGGTG GCCTGGGCAA CGTCGGCAAG
ACGCTCAGGA AGGGCTTCGA CATCCAGCTC AATGCCAAGC CGAACGCACG CACCACGGCC
TGGATCGCCT ATTCGCACCA GGGGGCCCGC ATCACGGCAC CGGACCCGAG CGCACCCGCC
ACGCGCGGCA AGGAGATCGA GAACGTGCCG CACTACCTGG TGTCCGCCGG CGTGGACTAC
CAGGCGAGCG ACAAGCTCAA GCTCTCCGGC TGGGCCAACG CGCAGGGCGA CTACTACGTG
GAGCGCACCA ACACCTTGGG CCGCTTCGGA CGCTATGCGC TGCTGAACCT CGGGGCCACC
TACCGCGTGT CTCCCACGAT GGACGTGAAC CTGCAGATGA AGAACGTGAC CAACCGCAAG
TACGTCTATG CCTGGTACGA CAGCGGCTCC TCGGGCTACT CGCCCGGCGA CGGCCGGGGT
GTGTACGCCA GCCTGAACAT GAGGTTCTGA
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| Protein sequence | MKPSDEINFM NYTNSMRRRL LVNSFKLGPL LWAPTWAFAA DTPDQAVFAA PVAAQTDKNT
DSSALTLGTV NIQATASGPL SARQVFSSVD ILGASVLEDQ HVDYSWELFS RAPGVQVTQF
KQGTDAGRFS FRGFNGEGRV NAVKLLIDGI PSNDNAGGMP FLDAVFPQDI EAIEIVRGTN
DPRYGLNNIA GNANVITRTG GNQGRASLTL GSFGTKEVEI SKGIESGNWS QNYSLAYRDS
DGYRDHADAR KLAFSGKWFY TSDDGRWRAG VIARYYRNKA LESGYLSYDQ AMRTPRSSPA
YASADRGERE TAQLSAHLDG ELTNTLSWST KVYANQYENR RWVRFSAASA QQERYNDEKQ
QGAITSLTWR PQVGWAHEFT LEGGLDAQWQ HNLGQRYRTT ERVRTSQFRD WDFDLDTQGA
YVQAVIRPVE ALKIVPAFRV DHVGGQFTDR LGRTTSPVHD YGLIQQPKIS VAYALNPQAS
LYANWGRTFQ IGTGIDAYRT QARNLQPSIN DGWEAGVKFN PLPWLDGRVA YWEQRASGEV
ARVLGVDGLP DPGGLGNVGK TLRKGFDIQL NAKPNARTTA WIAYSHQGAR ITAPDPSAPA
TRGKEIENVP HYLVSAGVDY QASDKLKLSG WANAQGDYYV ERTNTLGRFG RYALLNLGAT
YRVSPTMDVN LQMKNVTNRK YVYAWYDSGS SGYSPGDGRG VYASLNMRF
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