Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2025 |
Symbol | |
ID | 7969818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2169019 |
End bp | 2169993 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792622 |
Product | hypothetical protein |
Protein accession | YP_002943936 |
Protein GI | 239815026 |
COG category | [S] Function unknown |
COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.744071 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTCC GCGCACTGGC GCTTCTTTCC CTTGCCGCGG CAGCGCTCTG CACTGCGGTT CCGGCTGCCG CGCAGCCCTA CCCCTCGCGC CCCGTCACGC TCGTCGTGCC GCAGGCTGCG GGCGGCACCA ACGACATCGT GGGCCGCCTC GTGGGCCAGA AGATCGGCGA GCTGATGAAC GCGAGCGTGG TGGTCGACAA CCGGCCGGGC GCGGGCGGCA ACATCGGCAC GCAACTGGTC GCCAAGGGCC CGAAGGACGG CTACATGCTG CTCATGACCA TCAGCAGCAG CCAGGCCATC AACCCGGCGC TCTACAAGAA CCCGGGCTTC GATCCGGTGA AGGACTTCAA GCCCGTGGGC CTGATCGGCG CGGTGCCCAA CGTGCTGCTG GTCAACCCCT CGTTTCCCGC GAAGGATTTC AACGAGTTCC TGAAGCTCGC GCGGCAGAAG GGCGCCAACT ACCAGTACGC CTCGGCCGGC AACGGCACGC TCAACCACCT GCTGGGCGAA ATGCTCAACA GCATGGCCGG TATCTCGCTG CAGCACGTGC CGTACAAGGG CGTGGCGCCC GCACTCAACG ACGTGCTCGG CGGGCAGCTG CCGATCGTGT TCGCGAGCCT GCCTTCGGCG CTCTCGCACA TCAAGGCCGG CAAGCTGCGC GCGCTGGCCG TGAGCGGCGA GAAGCGCTCG CCAGTGCTGC CGGAGGTGCC TGCCATTGCC GAGGCCGTGC CGGGCTACAA CGGCACGCTC TGGATCGGCC TGTTCGCGCC AGCGGGCGTG CCGCCCGAGG TGCTCGCCAC GCTGCAGGAC GCGACGCGCA AGGCGCTGGC CGCGAAGGAC CTGCGCGACA AGCTTGAACA GCAGGGCGTG GAGATCGCGG CGCCCACCAC GCCCGATCAA TTCTCGAAAC TGCTGCAGGA CGACCTCGCC AAGTGGGCGC GCATCGTCAA GGCCTCCGGC GCAGCAGTTG ACTGA
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Protein sequence | MTFRALALLS LAAAALCTAV PAAAQPYPSR PVTLVVPQAA GGTNDIVGRL VGQKIGELMN ASVVVDNRPG AGGNIGTQLV AKGPKDGYML LMTISSSQAI NPALYKNPGF DPVKDFKPVG LIGAVPNVLL VNPSFPAKDF NEFLKLARQK GANYQYASAG NGTLNHLLGE MLNSMAGISL QHVPYKGVAP ALNDVLGGQL PIVFASLPSA LSHIKAGKLR ALAVSGEKRS PVLPEVPAIA EAVPGYNGTL WIGLFAPAGV PPEVLATLQD ATRKALAAKD LRDKLEQQGV EIAAPTTPDQ FSKLLQDDLA KWARIVKASG AAVD
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