| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2023 |
|---|
| Symbol | |
|---|
| ID | 7969816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2166309 |
|---|
| End bp | 2167487 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644792620 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_002943934 |
|---|
| Protein GI | 239815024 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.525082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACA TCGTCATCGT TTCGGCTGCA CGCACGGCGG TCGGCAAGTT CGGCGGCTCG
CTCGCCGGCA TTGCAGCCAC CGAGCTGGGC GCCCTCGTGA TCAAGGAAGT GATCGCGCGC
GCCAATCTCA CGGCCGACCA GGTCGGCGAA GCCATCATGG GCCAGGTGCT GGCCGCCGGT
GCGGGGCAGA ACCCCGCGCG CCAGGCATGG CTCAAGAGCG GCGGCGCCAA GGAAACGCCG
GCGCTCACCA TCAACGCCGT GTGCGGCTCG GGCCTGAAGG CCGTGATGCT CGCGGCGCAG
GCCGTGGCCA CGGGCGACAG CGAGATCGTG ATTGCCGGCG GCCAGGAGAA CATGAGCGCC
GCGCCGCACG TGCTGCCCAA TTCGCGCAAC GGCCAGCGCA TGGGCGACTG GAAGCTGGTC
GACACGATGA TCGTGGATGG CCTGTGGGAC GTCTACAACC AGTACCACAT GGGCATCACG
GCCGAGAACG TGGCCAAGAA GTACGGCATC GACCGCTCCG CGCAGGACGA GCTCGCGCTC
GGCAGCCAGA CCAAGGCCGC GGCTGCGCAG GACGCCGGCA AGTTCAAGGA CGAGATCGTG
CCCGTGAGCA TTGCGCAGAA GAAGGGCGAC CCGATCGTCT TCGACAAGGA CGAGTTCATC
AACCGCAAGA CCAGCGCCGA AGGCCTGGCG GGCCTGCGCC CTGCGTTCGA CAAGGCCGGC
GGCGTGACCG CGGGCAATGC CTCGGGCCTG AACGACGGCG CCGCCGCCGT GATGGTGATG
ACGGCCAAGA AGGCGGCCGC GCTCGGCCTC AAGCCGCTGG GCCGCATCGC AAGCTACGCC
ACGGCCGGCC TCGATCCGGC GATCATGGGC ATGGGCCCGG TGCCGGCGTC GACCAAGGCG
CTGCAGCGCG CCGGCTGGAA GGCCGCCGAC CTCGACCTGC TCGAGATCAA CGAGGCCTTC
GCGGCGCAGG CCTGCGCGGT GAACAAGGAA ATGGGCTGGG ACGTGAACAA GGTCAACGTG
AACGGCGGCG CCATTGCCAT CGGCCACCCG ATCGGCGCGT CGGGCTGCCG CATCCTGGTG
ACGCTGCTGC ACGAGATGCA GCGCCAGAAC GCGAAGAAGG GCATTGCGTC GCTGTGCATC
GGCGGCGGCA TGGGCGTGGC GCTGACGATC GAGCGATAG
|
|---|
| Protein sequence | MEDIVIVSAA RTAVGKFGGS LAGIAATELG ALVIKEVIAR ANLTADQVGE AIMGQVLAAG
AGQNPARQAW LKSGGAKETP ALTINAVCGS GLKAVMLAAQ AVATGDSEIV IAGGQENMSA
APHVLPNSRN GQRMGDWKLV DTMIVDGLWD VYNQYHMGIT AENVAKKYGI DRSAQDELAL
GSQTKAAAAQ DAGKFKDEIV PVSIAQKKGD PIVFDKDEFI NRKTSAEGLA GLRPAFDKAG
GVTAGNASGL NDGAAAVMVM TAKKAAALGL KPLGRIASYA TAGLDPAIMG MGPVPASTKA
LQRAGWKAAD LDLLEINEAF AAQACAVNKE MGWDVNKVNV NGGAIAIGHP IGASGCRILV
TLLHEMQRQN AKKGIASLCI GGGMGVALTI ER
|
|---|
| |