| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1993 |
|---|
| Symbol | |
|---|
| ID | 7969786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2141241 |
|---|
| End bp | 2142185 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644792591 |
|---|
| Product | cytochrome c oxidase, subunit II |
|---|
| Protein accession | YP_002943905 |
|---|
| Protein GI | 239814995 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
|---|
| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0975891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGG CGAGCGAGGG CGCACCCCAA TCCGCCCTGC GGGCCGCCGG CCCCGTCGCG
CAATCGCTGC TCGAAGTGAG CGGCGTGCTG GCGGTGGGCG GCGCGGTGAT CTTCGCCGGC
GTGATGCTGC TGCTCGCACT GGCCGTTCGC CACCGCGGTG GCGGCCGGGT GAACACGCGC
TGGTGGCTGC TCGGCGGCGG CCTTGCTTTT CCGACGGTGG TGCTCTCGGC GCTCTTCGCC
CACAGCGAAT TCCACCGGCC GCCGTGGCGG CCCATTCCAC CGCCCGGCGC GCTGATCGTC
GGCGTCACGG GCCACATGTG GTGGTGGGAG GTGCGCTACC GCGACCCCGC CAGCGGCGCC
GAGGTGGTCA CGGCGAACGA GATCCGCATT CCGGTCGGCC GGCCGGTCTA TTTCGGCCTT
GGCAGCGCCG ACGTGATCCA CAGTTTCTGG GTGCCCTCGC TCGGCGGCAA GATGGACATG
CTGCCCGGCC GCGTGCAGCA CCTGCTGCTG CAGGCCGGCC GGCCCGGCAC CTGGCGCGGG
CAGTGCGCCG AATACTGCGG CGAGCAGCAT GCGCGCATGG CGCTGCACGT GGTGGCCGAA
GAGCCCGCGG CTTTCGATGC ATGGCTTGCG GGGCAGGCAC GGCCGGCGGC CGCGGCTTCG
CGCGAGCTCG AACGCGGCCG CGAGGCCTTC CTCGCGCACC GCTGCAACGC CTGCCACACC
GTGCGCGGCG TCAGCGAGCA GAGCCGCCTC GGGCCCGACC TCACGCACGT GGGCAGCCGG
CTGCACCTGG GCGCCGGCAC CGCGCCCAAC GATGCCGCGC AGCTCGCCGC CTGGGTGGCC
CACACGCAGC AGCTGAAGCC GGGCGCGCGC ATGCCCTCCT CCGGCGAGCG CATCGGCGAG
GCCGACCTGC AATCCATCGC GGCCTGGCTC GCGCAACTGA AATGA
|
|---|
| Protein sequence | MNAASEGAPQ SALRAAGPVA QSLLEVSGVL AVGGAVIFAG VMLLLALAVR HRGGGRVNTR
WWLLGGGLAF PTVVLSALFA HSEFHRPPWR PIPPPGALIV GVTGHMWWWE VRYRDPASGA
EVVTANEIRI PVGRPVYFGL GSADVIHSFW VPSLGGKMDM LPGRVQHLLL QAGRPGTWRG
QCAEYCGEQH ARMALHVVAE EPAAFDAWLA GQARPAAAAS RELERGREAF LAHRCNACHT
VRGVSEQSRL GPDLTHVGSR LHLGAGTAPN DAAQLAAWVA HTQQLKPGAR MPSSGERIGE
ADLQSIAAWL AQLK
|
|---|
| |