Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1984 |
Symbol | |
ID | 7969777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2127547 |
End bp | 2132568 |
Gene Length | 5022 bp |
Protein Length | 1673 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644792582 |
Product | putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase |
Protein accession | YP_002943896 |
Protein GI | 239814986 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3280] Maltooligosyl trehalose synthase |
TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase [TIGR02401] malto-oligosyltrehalose synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.432862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTGGAGC GCCTGTGCCG GCACTACGGC ATCTCGCCGG CCTACCACGA CGCCTTCGGA ACGCTGCGCC ATGCATCGCC CGAGAACCTG GCCGCGCTGC TGGCCGAGTT CGGCGTGCAG GCGGGTGCCG CAACTGGCGC AGAGGCCGAT GCGCCCGCCA TGCCACCGGT GCAGGTGGTG CAGGCGCATG CACCGCACTG GTCGCTGCAG CTGCCGCAGC GCTCAGGCAG CCTGCGCTGG CGGCTGCGCG ACGAGCAGGG GCTCGTGCGC GAGGGCGAAG CCGACGCGCA GCCCTGGCCG CATGGCAGCT GCACGCTGCA GCTGGCCGAG CCGCTCGCGC CCGGCTATCA CTGGCTGCAG ATCGACGGCC TGGCCGGCGA GACCCTGCTC GTCGCTTCGC CCGGCCGCTG CTACCGCCCG CCCGCCGTGC AGGACGGTGG CCGCGTCTGG GGGCCGGCGC TGCAGCTGTA TGCGCTGCGT TCGGCGCGCA ACTGGGGCAT CGGCGATTTC GGCGACCTCG AAGCGCTCGT CGACCGCATG GCCGGGCAGG GCACCGACCT GATCGGCCTG AACCCGCTGC ATGCGCTGTT CCCGACCGAT CCGCCGCGCG CCAGCCCCTA CAGCCCGTCG TCGCGGCAAT GGATCAACGT GCTGTACATC GACGTCGAGG CGGTCGACGA CTTCGCCGCC TGCGAGGCCG CGCGCCGGCA CGTCGAATCG CCGGGGTTCC AGGGCCGGCT CGCGGCGCTG CGGGCCGCGC CGCTGGTCGA CCATGCCGGC GTGGCCACCG CCAAGTTCGA AGTGCTGGAG CTGCTGTTCG AGCACTTTCG CGCGCGGCAT CTTTCGCCGG CCGGCGCTCC CGATGCACGC GGCGAGGCCT TCCTGGCCTT TGTCTCGGCG CAGGGCGAGC CGCTGCGCCA GCACGCCTTG TTCGAGGCGC TGCAGGCCCA CTTTGCCGCG GCCGATCCGC AGTGCTGGGG CTGGCTCGCC TGGCCCGAAG CCTATCGGGA GGCGGATTCG CCCGAGGTGC AGGCCTTTGC GGCCGAGCAT GCCGAGCGGC TGCAATACCA CCAGTACCTG CAATGGGTGG CCGAGCACCA GCTTGCGCGC GCGGGCGAAC GCTGCAAGGC GCTGGGCATG GGCATCGGGC TCTACCTGGA CCTGGCCGTG TCGGTGGACC GCGGCGGCTC CGACGCCTGG GCCGCGCGCC ACTGCTTCGC GGTCGGCGCG AGCATCGGTG CGCCGCCCGA CGAGTTCAAC CCGGCCGGGC AGAACTGGGG CCTGCCGCCG CTGCGCCCCG ACCACCTGCG CACGCACCAC TACCAGCCCT TCGTGCAGAT GCTGCGCGCC AACATGCGGC ATGCCGGCGC GCTGCGCATC GACCATGTGA TGGGGCTGAT GCGTCTGTTC TGGATTCCGC CGGGCCGCTC GCCGCACGAC GGCGCCTACG TGCGCTACGC GGTCGAGGAG ATGCTGGCCA TCGTGGCGGT CGAAAGCCAT CGGCATGGCT GCATGGTGGT GGGCGAAGAC CTGGGCACGG TGGAAGACGC GATGCGCGAA GCGCTCGCGC GCGCCGATGT GCTCTCCTAC CGGCTGCTCT ACTTCGAGAA GCAGCAGGGC GGCGGCTTCA CGCTGCCTGC GGCCTACCCG GCAGCCGCGC TGGTGGCCAT CAGCACGCAC GACCTCGCCA CGCTCGCGGG TTGGTGGTCG GGCCACGACC TGCGGCTGCG GTTGGCGCTC GGGCTTTTTC CCGATCCGCG GCTGTTCGAT GCGCAGCTGC TGGACCGCGC GCAGGAACGC ATCCGGCTGA CGCTGGCCGT GCGCGAGGCG GGCCTGCTGT CCGCCGACGA GGCGGCGCAG GCGCTGTCGC TCGCAGTGCC TTCGCCGCGC ATCATGCAGG CGGTCCACGC GTTCCTGGCC GCGGCGCCGT CGGCGCTGAT GGTGTTCCAG CTCGAGGACG TGGCCGGCGA GGTGGAGCAG GCCAACATGC CCGGCACCAC CGACACCCAT CCCAACTGGC GGCGCAAGCT GCTGCCCAGC GTGCAGGAGC TGGCGGCGGG CGATGCGATG CAGGGGCTCA CGGAACACCT GCGCGCGATT CGCCCGCGCC GCAGCCTGCG CGCGGAAGCG GCGCCGTCCA CGCTGCTGCA GGCGCGCGTG CCGAGGGCCA CCTACCGCCT GCAGTTCCAC CAGGGCTTCG GCTTCGACGA TGCGATCCGC GTGCTGCCCT ATCTCGCGCA GCTCGGCGTG AGCCATGTGT ATTGCTCGCC CATCCAGCGC GCCCGCGCGG GCAGCACGCA CGGCTACGAC GTGGTGGCCC ATGCCGAGGT CAATCCCGAG CTCGGCGGCG CCGAGGGCTT TGCGCGCTTC GTCGCGGCGC TGCAGGCGCA CGGCCTCGGG CAGCTGCTCG ACATGGTGCC CAACCACATG GGCGTGCTCG GCGCCGACAA CGCCTGGTGG ATGGACGTGC TGGAGAACGG CCCGGCCTCG CTCTTCGCGC ATCACTTCGA CATCGACTGG CAGCCGCTCA ACAAGGAGCT GGCCGGCAAG GTGCTGCTGC CGGTGCTTGG CGGGCACTAT GGCGAGGTGC TCGCGAGCGG GGAGCTGGCG CTGCACTTCG AAGCGGCGCA CGGCAGCTTC GCGCTGCGCT ACTTCGACCA CCGGTTTCCG CTGGCGCCCG AAAGCTATCC CGTGGTTCTT GCATGCGCAT TGCCGCACCT GAAGGACCCG ATGCTCGCAG CGCAGCTCGC CAGCCTCTCG GCCGCCTTCG GCCACCTGCC CAGCCGCCGT GCGCAGACGC CCGCCGAATG CACCGAGCGC GTGCGCGACA AGGAACTGTT CAAGGCCCGC CTCGCGCATC TGGCAGAGGC GCATCCGTCG CTCGCGCGCG CCGTGCTGGC CGCGGTGGCG GAGTTCAACC TGGCGTCGGA AGAGGCGCGC GACCAGCTGC ACCGGCTCAT CGACCTGCAG GCCTTCCGGC TCGCCTACTG GCGCGTGGCG GCCGACGAAA TCAACTACCG GCGCTTCTTC GACATCAACG ACCTGGCGGC GGTGCGCATG GAACGCGACG AGGTGTTCGA GGCCACCCAG TCCTTCGCGC TCGACCTTGC CGCGGCCGGC GTGGTGGACG GCCTGCGCAT CGACCATCCC GATGGCCTGT ACGACCCTGC GCGCTACTTC CGGCAGCTGC AGGAAGGCTA TGCGCGCCGC GCGGGCATCG TGCTGCCGGC TACCGGCCCC GATGGACGGC CGGCGCGCCC GCTGTACGTG GTGGCCGAGA AGATCGCCGC CTCGGAAGAA GAGGTGCCCG CCGAATGGCA TGTGCACGGC ACCACCGGCT ACCGCTTTGC CAACGTGGCC AACGGCGTGC TCGTGGACAC CGCCGCGGCC GACGCCCTGC GGCAGGCCTG GCATGGCTTC ACGGGCGAGG CGCAGGACTT CGGCTCGGTC GCAAGGGCCG GCAAGCGCGA GGTCATGCGC AGCGCGCTGT CGTCGGAGCT CAACGTGCTC TCCTCCGAAC TGCTCAGGAT TGCGCGGGCC GACCGCGGCA CACGCGACTA CACGCTCAAC GCGCTGCGCC GCGCGCTCGC CGAAGTGGCG GCCTGCATGC CGGTCTACCG CACCTACATC GTCGACGCAC CCTCCGCGCA GGACGCGCAT TTCATCGACG CCGCCACCGA GGCGGCCGAG CGCCAGAGTG TCGATGCCGA CCGCTCCGTC TTCGCCTTCG TGCGCCGCTC GCTGCGCGGC GAGGCCGCGG CCGCGCATGC GCCACCGGCG CTGGCCGGGC GCGTGCGCCG GTTCGCGATG CGCTTCCAGC AGTTCAGCGC GCCGGTCGCG GCCAAGGGCG TGGAGGACAC CTCGTTCTAC CGCTACTTTC CGCTCAGTTC GCTCAATGAG GTCGGCGGCG AGCCGGACCA GTTCGGTTTC GACGTGCCCG AGTTCCATGC ATTGAGCGCC GACCGCGCGC GGCACTGGCC GCACACCATG CTCGCGACCT CCACGCACGA CAACAAGCGA TCGGAAGAGG TGCGCAACCG CATCGACGTG CTCTCCGAAA TGCCCAGCGA GTGGCGCGAC GCGCTCGCGC GCTGGCACGC GCTGTGCCGC GGCGGCGAGC AGGCGGAGGC AGCGCCTTCG CGCGCCGACG AATACCTGCT CTACCAGACC CTGCTCGGCA CCTTGCCCTT CGGCGGCCTC GATGCTGCCG ACGTGCCGGC CTATGCCGCG CGTGTGTGGC AGTACATGCA GAAGGCCGCG CGCGAAGCCA AGCTCCACAC GCGCTGGACC CAGCCCGATG CACCGTACGA AGCGGCGCTC GAAGGCCTGG TGCAGCGGAT CCTCTCGGAC CTGTCGAAGG ACGGCTGCCT TGCGGACATC CAGCGCCTGG CCGATCGCTT GTCATGGTTC GGTGCGTGGA ACGGCTTGAC GCTCACGCTG CTGAAGTACG GCTCGCCGGG CGTGCCGGAT CTCTATCAAG GAAGCGAGCT GATCGACCTG AGCCTGGTCG ATCCCGACAA CCGGCGGCCG GTGGACTATG AACTGCGCAG CCGTCGGCTC GATGAGCTCC AGGCGATGGC AGGCGGGCAC GACCTTGCTG CGCGCGTGCA GGCGCTGGCC GGGTCGCCGC ACGATGGCCG CGCGAAGCTC TGGTTCATCT GGCGGCTGCT GTCGATGCGG CGCTCGCATG CGGAACTATT CCGCGAAGGC AGCTACGAAG GGCTCGCGGG CGAAGGGCCG CTGGCGCGGC ATGTGGTGGC CTTTGCGCGC AGGCACGAAG GGCGGACGCT GGTGGTGATG GCGGGGCGGT TGTTTGCGGG GATTGCGTGC GCCGGGGCGG ATGGTGTGCC GGTGCTTCCC GATGCGGAGG CGTGGAGGGG GACGAGGGTG GTGTTGCCTG AGGATCTCGG AGGCGCAACG CTGGTGAACG TGCTCACCGG CGAATCGCTG GCTGCCGAGG ATCGCGTCGT CTCGCTGAAA GATGCGTTCT GCCGCATGCC TTGGGCTATC TTCCAAAAAT AG
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Protein sequence | MLERLCRHYG ISPAYHDAFG TLRHASPENL AALLAEFGVQ AGAATGAEAD APAMPPVQVV QAHAPHWSLQ LPQRSGSLRW RLRDEQGLVR EGEADAQPWP HGSCTLQLAE PLAPGYHWLQ IDGLAGETLL VASPGRCYRP PAVQDGGRVW GPALQLYALR SARNWGIGDF GDLEALVDRM AGQGTDLIGL NPLHALFPTD PPRASPYSPS SRQWINVLYI DVEAVDDFAA CEAARRHVES PGFQGRLAAL RAAPLVDHAG VATAKFEVLE LLFEHFRARH LSPAGAPDAR GEAFLAFVSA QGEPLRQHAL FEALQAHFAA ADPQCWGWLA WPEAYREADS PEVQAFAAEH AERLQYHQYL QWVAEHQLAR AGERCKALGM GIGLYLDLAV SVDRGGSDAW AARHCFAVGA SIGAPPDEFN PAGQNWGLPP LRPDHLRTHH YQPFVQMLRA NMRHAGALRI DHVMGLMRLF WIPPGRSPHD GAYVRYAVEE MLAIVAVESH RHGCMVVGED LGTVEDAMRE ALARADVLSY RLLYFEKQQG GGFTLPAAYP AAALVAISTH DLATLAGWWS GHDLRLRLAL GLFPDPRLFD AQLLDRAQER IRLTLAVREA GLLSADEAAQ ALSLAVPSPR IMQAVHAFLA AAPSALMVFQ LEDVAGEVEQ ANMPGTTDTH PNWRRKLLPS VQELAAGDAM QGLTEHLRAI RPRRSLRAEA APSTLLQARV PRATYRLQFH QGFGFDDAIR VLPYLAQLGV SHVYCSPIQR ARAGSTHGYD VVAHAEVNPE LGGAEGFARF VAALQAHGLG QLLDMVPNHM GVLGADNAWW MDVLENGPAS LFAHHFDIDW QPLNKELAGK VLLPVLGGHY GEVLASGELA LHFEAAHGSF ALRYFDHRFP LAPESYPVVL ACALPHLKDP MLAAQLASLS AAFGHLPSRR AQTPAECTER VRDKELFKAR LAHLAEAHPS LARAVLAAVA EFNLASEEAR DQLHRLIDLQ AFRLAYWRVA ADEINYRRFF DINDLAAVRM ERDEVFEATQ SFALDLAAAG VVDGLRIDHP DGLYDPARYF RQLQEGYARR AGIVLPATGP DGRPARPLYV VAEKIAASEE EVPAEWHVHG TTGYRFANVA NGVLVDTAAA DALRQAWHGF TGEAQDFGSV ARAGKREVMR SALSSELNVL SSELLRIARA DRGTRDYTLN ALRRALAEVA ACMPVYRTYI VDAPSAQDAH FIDAATEAAE RQSVDADRSV FAFVRRSLRG EAAAAHAPPA LAGRVRRFAM RFQQFSAPVA AKGVEDTSFY RYFPLSSLNE VGGEPDQFGF DVPEFHALSA DRARHWPHTM LATSTHDNKR SEEVRNRIDV LSEMPSEWRD ALARWHALCR GGEQAEAAPS RADEYLLYQT LLGTLPFGGL DAADVPAYAA RVWQYMQKAA REAKLHTRWT QPDAPYEAAL EGLVQRILSD LSKDGCLADI QRLADRLSWF GAWNGLTLTL LKYGSPGVPD LYQGSELIDL SLVDPDNRRP VDYELRSRRL DELQAMAGGH DLAARVQALA GSPHDGRAKL WFIWRLLSMR RSHAELFREG SYEGLAGEGP LARHVVAFAR RHEGRTLVVM AGRLFAGIAC AGADGVPVLP DAEAWRGTRV VLPEDLGGAT LVNVLTGESL AAEDRVVSLK DAFCRMPWAI FQK
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