Gene Vapar_1984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1984 
Symbol 
ID7969777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2127547 
End bp2132568 
Gene Length5022 bp 
Protein Length1673 aa 
Translation table11 
GC content71% 
IMG OID644792582 
Productputative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase 
Protein accessionYP_002943896 
Protein GI239814986 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3280] Maltooligosyl trehalose synthase 
TIGRFAM ID[TIGR00217] 4-alpha-glucanotransferase
[TIGR02401] malto-oligosyltrehalose synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.432862 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGGAGC GCCTGTGCCG GCACTACGGC ATCTCGCCGG CCTACCACGA CGCCTTCGGA 
ACGCTGCGCC ATGCATCGCC CGAGAACCTG GCCGCGCTGC TGGCCGAGTT CGGCGTGCAG
GCGGGTGCCG CAACTGGCGC AGAGGCCGAT GCGCCCGCCA TGCCACCGGT GCAGGTGGTG
CAGGCGCATG CACCGCACTG GTCGCTGCAG CTGCCGCAGC GCTCAGGCAG CCTGCGCTGG
CGGCTGCGCG ACGAGCAGGG GCTCGTGCGC GAGGGCGAAG CCGACGCGCA GCCCTGGCCG
CATGGCAGCT GCACGCTGCA GCTGGCCGAG CCGCTCGCGC CCGGCTATCA CTGGCTGCAG
ATCGACGGCC TGGCCGGCGA GACCCTGCTC GTCGCTTCGC CCGGCCGCTG CTACCGCCCG
CCCGCCGTGC AGGACGGTGG CCGCGTCTGG GGGCCGGCGC TGCAGCTGTA TGCGCTGCGT
TCGGCGCGCA ACTGGGGCAT CGGCGATTTC GGCGACCTCG AAGCGCTCGT CGACCGCATG
GCCGGGCAGG GCACCGACCT GATCGGCCTG AACCCGCTGC ATGCGCTGTT CCCGACCGAT
CCGCCGCGCG CCAGCCCCTA CAGCCCGTCG TCGCGGCAAT GGATCAACGT GCTGTACATC
GACGTCGAGG CGGTCGACGA CTTCGCCGCC TGCGAGGCCG CGCGCCGGCA CGTCGAATCG
CCGGGGTTCC AGGGCCGGCT CGCGGCGCTG CGGGCCGCGC CGCTGGTCGA CCATGCCGGC
GTGGCCACCG CCAAGTTCGA AGTGCTGGAG CTGCTGTTCG AGCACTTTCG CGCGCGGCAT
CTTTCGCCGG CCGGCGCTCC CGATGCACGC GGCGAGGCCT TCCTGGCCTT TGTCTCGGCG
CAGGGCGAGC CGCTGCGCCA GCACGCCTTG TTCGAGGCGC TGCAGGCCCA CTTTGCCGCG
GCCGATCCGC AGTGCTGGGG CTGGCTCGCC TGGCCCGAAG CCTATCGGGA GGCGGATTCG
CCCGAGGTGC AGGCCTTTGC GGCCGAGCAT GCCGAGCGGC TGCAATACCA CCAGTACCTG
CAATGGGTGG CCGAGCACCA GCTTGCGCGC GCGGGCGAAC GCTGCAAGGC GCTGGGCATG
GGCATCGGGC TCTACCTGGA CCTGGCCGTG TCGGTGGACC GCGGCGGCTC CGACGCCTGG
GCCGCGCGCC ACTGCTTCGC GGTCGGCGCG AGCATCGGTG CGCCGCCCGA CGAGTTCAAC
CCGGCCGGGC AGAACTGGGG CCTGCCGCCG CTGCGCCCCG ACCACCTGCG CACGCACCAC
TACCAGCCCT TCGTGCAGAT GCTGCGCGCC AACATGCGGC ATGCCGGCGC GCTGCGCATC
GACCATGTGA TGGGGCTGAT GCGTCTGTTC TGGATTCCGC CGGGCCGCTC GCCGCACGAC
GGCGCCTACG TGCGCTACGC GGTCGAGGAG ATGCTGGCCA TCGTGGCGGT CGAAAGCCAT
CGGCATGGCT GCATGGTGGT GGGCGAAGAC CTGGGCACGG TGGAAGACGC GATGCGCGAA
GCGCTCGCGC GCGCCGATGT GCTCTCCTAC CGGCTGCTCT ACTTCGAGAA GCAGCAGGGC
GGCGGCTTCA CGCTGCCTGC GGCCTACCCG GCAGCCGCGC TGGTGGCCAT CAGCACGCAC
GACCTCGCCA CGCTCGCGGG TTGGTGGTCG GGCCACGACC TGCGGCTGCG GTTGGCGCTC
GGGCTTTTTC CCGATCCGCG GCTGTTCGAT GCGCAGCTGC TGGACCGCGC GCAGGAACGC
ATCCGGCTGA CGCTGGCCGT GCGCGAGGCG GGCCTGCTGT CCGCCGACGA GGCGGCGCAG
GCGCTGTCGC TCGCAGTGCC TTCGCCGCGC ATCATGCAGG CGGTCCACGC GTTCCTGGCC
GCGGCGCCGT CGGCGCTGAT GGTGTTCCAG CTCGAGGACG TGGCCGGCGA GGTGGAGCAG
GCCAACATGC CCGGCACCAC CGACACCCAT CCCAACTGGC GGCGCAAGCT GCTGCCCAGC
GTGCAGGAGC TGGCGGCGGG CGATGCGATG CAGGGGCTCA CGGAACACCT GCGCGCGATT
CGCCCGCGCC GCAGCCTGCG CGCGGAAGCG GCGCCGTCCA CGCTGCTGCA GGCGCGCGTG
CCGAGGGCCA CCTACCGCCT GCAGTTCCAC CAGGGCTTCG GCTTCGACGA TGCGATCCGC
GTGCTGCCCT ATCTCGCGCA GCTCGGCGTG AGCCATGTGT ATTGCTCGCC CATCCAGCGC
GCCCGCGCGG GCAGCACGCA CGGCTACGAC GTGGTGGCCC ATGCCGAGGT CAATCCCGAG
CTCGGCGGCG CCGAGGGCTT TGCGCGCTTC GTCGCGGCGC TGCAGGCGCA CGGCCTCGGG
CAGCTGCTCG ACATGGTGCC CAACCACATG GGCGTGCTCG GCGCCGACAA CGCCTGGTGG
ATGGACGTGC TGGAGAACGG CCCGGCCTCG CTCTTCGCGC ATCACTTCGA CATCGACTGG
CAGCCGCTCA ACAAGGAGCT GGCCGGCAAG GTGCTGCTGC CGGTGCTTGG CGGGCACTAT
GGCGAGGTGC TCGCGAGCGG GGAGCTGGCG CTGCACTTCG AAGCGGCGCA CGGCAGCTTC
GCGCTGCGCT ACTTCGACCA CCGGTTTCCG CTGGCGCCCG AAAGCTATCC CGTGGTTCTT
GCATGCGCAT TGCCGCACCT GAAGGACCCG ATGCTCGCAG CGCAGCTCGC CAGCCTCTCG
GCCGCCTTCG GCCACCTGCC CAGCCGCCGT GCGCAGACGC CCGCCGAATG CACCGAGCGC
GTGCGCGACA AGGAACTGTT CAAGGCCCGC CTCGCGCATC TGGCAGAGGC GCATCCGTCG
CTCGCGCGCG CCGTGCTGGC CGCGGTGGCG GAGTTCAACC TGGCGTCGGA AGAGGCGCGC
GACCAGCTGC ACCGGCTCAT CGACCTGCAG GCCTTCCGGC TCGCCTACTG GCGCGTGGCG
GCCGACGAAA TCAACTACCG GCGCTTCTTC GACATCAACG ACCTGGCGGC GGTGCGCATG
GAACGCGACG AGGTGTTCGA GGCCACCCAG TCCTTCGCGC TCGACCTTGC CGCGGCCGGC
GTGGTGGACG GCCTGCGCAT CGACCATCCC GATGGCCTGT ACGACCCTGC GCGCTACTTC
CGGCAGCTGC AGGAAGGCTA TGCGCGCCGC GCGGGCATCG TGCTGCCGGC TACCGGCCCC
GATGGACGGC CGGCGCGCCC GCTGTACGTG GTGGCCGAGA AGATCGCCGC CTCGGAAGAA
GAGGTGCCCG CCGAATGGCA TGTGCACGGC ACCACCGGCT ACCGCTTTGC CAACGTGGCC
AACGGCGTGC TCGTGGACAC CGCCGCGGCC GACGCCCTGC GGCAGGCCTG GCATGGCTTC
ACGGGCGAGG CGCAGGACTT CGGCTCGGTC GCAAGGGCCG GCAAGCGCGA GGTCATGCGC
AGCGCGCTGT CGTCGGAGCT CAACGTGCTC TCCTCCGAAC TGCTCAGGAT TGCGCGGGCC
GACCGCGGCA CACGCGACTA CACGCTCAAC GCGCTGCGCC GCGCGCTCGC CGAAGTGGCG
GCCTGCATGC CGGTCTACCG CACCTACATC GTCGACGCAC CCTCCGCGCA GGACGCGCAT
TTCATCGACG CCGCCACCGA GGCGGCCGAG CGCCAGAGTG TCGATGCCGA CCGCTCCGTC
TTCGCCTTCG TGCGCCGCTC GCTGCGCGGC GAGGCCGCGG CCGCGCATGC GCCACCGGCG
CTGGCCGGGC GCGTGCGCCG GTTCGCGATG CGCTTCCAGC AGTTCAGCGC GCCGGTCGCG
GCCAAGGGCG TGGAGGACAC CTCGTTCTAC CGCTACTTTC CGCTCAGTTC GCTCAATGAG
GTCGGCGGCG AGCCGGACCA GTTCGGTTTC GACGTGCCCG AGTTCCATGC ATTGAGCGCC
GACCGCGCGC GGCACTGGCC GCACACCATG CTCGCGACCT CCACGCACGA CAACAAGCGA
TCGGAAGAGG TGCGCAACCG CATCGACGTG CTCTCCGAAA TGCCCAGCGA GTGGCGCGAC
GCGCTCGCGC GCTGGCACGC GCTGTGCCGC GGCGGCGAGC AGGCGGAGGC AGCGCCTTCG
CGCGCCGACG AATACCTGCT CTACCAGACC CTGCTCGGCA CCTTGCCCTT CGGCGGCCTC
GATGCTGCCG ACGTGCCGGC CTATGCCGCG CGTGTGTGGC AGTACATGCA GAAGGCCGCG
CGCGAAGCCA AGCTCCACAC GCGCTGGACC CAGCCCGATG CACCGTACGA AGCGGCGCTC
GAAGGCCTGG TGCAGCGGAT CCTCTCGGAC CTGTCGAAGG ACGGCTGCCT TGCGGACATC
CAGCGCCTGG CCGATCGCTT GTCATGGTTC GGTGCGTGGA ACGGCTTGAC GCTCACGCTG
CTGAAGTACG GCTCGCCGGG CGTGCCGGAT CTCTATCAAG GAAGCGAGCT GATCGACCTG
AGCCTGGTCG ATCCCGACAA CCGGCGGCCG GTGGACTATG AACTGCGCAG CCGTCGGCTC
GATGAGCTCC AGGCGATGGC AGGCGGGCAC GACCTTGCTG CGCGCGTGCA GGCGCTGGCC
GGGTCGCCGC ACGATGGCCG CGCGAAGCTC TGGTTCATCT GGCGGCTGCT GTCGATGCGG
CGCTCGCATG CGGAACTATT CCGCGAAGGC AGCTACGAAG GGCTCGCGGG CGAAGGGCCG
CTGGCGCGGC ATGTGGTGGC CTTTGCGCGC AGGCACGAAG GGCGGACGCT GGTGGTGATG
GCGGGGCGGT TGTTTGCGGG GATTGCGTGC GCCGGGGCGG ATGGTGTGCC GGTGCTTCCC
GATGCGGAGG CGTGGAGGGG GACGAGGGTG GTGTTGCCTG AGGATCTCGG AGGCGCAACG
CTGGTGAACG TGCTCACCGG CGAATCGCTG GCTGCCGAGG ATCGCGTCGT CTCGCTGAAA
GATGCGTTCT GCCGCATGCC TTGGGCTATC TTCCAAAAAT AG
 
Protein sequence
MLERLCRHYG ISPAYHDAFG TLRHASPENL AALLAEFGVQ AGAATGAEAD APAMPPVQVV 
QAHAPHWSLQ LPQRSGSLRW RLRDEQGLVR EGEADAQPWP HGSCTLQLAE PLAPGYHWLQ
IDGLAGETLL VASPGRCYRP PAVQDGGRVW GPALQLYALR SARNWGIGDF GDLEALVDRM
AGQGTDLIGL NPLHALFPTD PPRASPYSPS SRQWINVLYI DVEAVDDFAA CEAARRHVES
PGFQGRLAAL RAAPLVDHAG VATAKFEVLE LLFEHFRARH LSPAGAPDAR GEAFLAFVSA
QGEPLRQHAL FEALQAHFAA ADPQCWGWLA WPEAYREADS PEVQAFAAEH AERLQYHQYL
QWVAEHQLAR AGERCKALGM GIGLYLDLAV SVDRGGSDAW AARHCFAVGA SIGAPPDEFN
PAGQNWGLPP LRPDHLRTHH YQPFVQMLRA NMRHAGALRI DHVMGLMRLF WIPPGRSPHD
GAYVRYAVEE MLAIVAVESH RHGCMVVGED LGTVEDAMRE ALARADVLSY RLLYFEKQQG
GGFTLPAAYP AAALVAISTH DLATLAGWWS GHDLRLRLAL GLFPDPRLFD AQLLDRAQER
IRLTLAVREA GLLSADEAAQ ALSLAVPSPR IMQAVHAFLA AAPSALMVFQ LEDVAGEVEQ
ANMPGTTDTH PNWRRKLLPS VQELAAGDAM QGLTEHLRAI RPRRSLRAEA APSTLLQARV
PRATYRLQFH QGFGFDDAIR VLPYLAQLGV SHVYCSPIQR ARAGSTHGYD VVAHAEVNPE
LGGAEGFARF VAALQAHGLG QLLDMVPNHM GVLGADNAWW MDVLENGPAS LFAHHFDIDW
QPLNKELAGK VLLPVLGGHY GEVLASGELA LHFEAAHGSF ALRYFDHRFP LAPESYPVVL
ACALPHLKDP MLAAQLASLS AAFGHLPSRR AQTPAECTER VRDKELFKAR LAHLAEAHPS
LARAVLAAVA EFNLASEEAR DQLHRLIDLQ AFRLAYWRVA ADEINYRRFF DINDLAAVRM
ERDEVFEATQ SFALDLAAAG VVDGLRIDHP DGLYDPARYF RQLQEGYARR AGIVLPATGP
DGRPARPLYV VAEKIAASEE EVPAEWHVHG TTGYRFANVA NGVLVDTAAA DALRQAWHGF
TGEAQDFGSV ARAGKREVMR SALSSELNVL SSELLRIARA DRGTRDYTLN ALRRALAEVA
ACMPVYRTYI VDAPSAQDAH FIDAATEAAE RQSVDADRSV FAFVRRSLRG EAAAAHAPPA
LAGRVRRFAM RFQQFSAPVA AKGVEDTSFY RYFPLSSLNE VGGEPDQFGF DVPEFHALSA
DRARHWPHTM LATSTHDNKR SEEVRNRIDV LSEMPSEWRD ALARWHALCR GGEQAEAAPS
RADEYLLYQT LLGTLPFGGL DAADVPAYAA RVWQYMQKAA REAKLHTRWT QPDAPYEAAL
EGLVQRILSD LSKDGCLADI QRLADRLSWF GAWNGLTLTL LKYGSPGVPD LYQGSELIDL
SLVDPDNRRP VDYELRSRRL DELQAMAGGH DLAARVQALA GSPHDGRAKL WFIWRLLSMR
RSHAELFREG SYEGLAGEGP LARHVVAFAR RHEGRTLVVM AGRLFAGIAC AGADGVPVLP
DAEAWRGTRV VLPEDLGGAT LVNVLTGESL AAEDRVVSLK DAFCRMPWAI FQK