Gene Vapar_1981 details

Gene Information

• Locus tag: Vapar_1981
• ID: 7969774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2122760
• End bp: 2123500
• Gene Length: 741 bp
• Protein Length: 246 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644792579
• Product: TM helix repeat-containing protein
• Protein accession: YP_002943893
• Protein GI: 239814983

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0913829
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACCGAT TTGGCATTCA CCTGGAGCCG CTGAACGCAA TGCTCTACCA GGTCGGGGCC 
TTCGTGCCCC GCCTGGCGAT TGCATTGGTG GTGGTGCTTG CCGGCTGGCT CATTGCCAAG 
GCCGCGCGCT TTGCGGTGAC CAAGGCGCTG CGCGCGATCA ACTTCAACGT GCTGACCGAG 
CGCGCGGGCC TGGACAACTT CCTGCGCCAG GGCGGCTGGC CGGGCGACAC CTGCAGCCTG 
TTCGGCGTGC TGGCCTATTG GCTGGTGATC TTTGCGGCAC TGCTGCTGGC GTTCAACGGC 
ATGGGCCTGA GCTACATCGC CGACCTGCTC GGGCGCGTCG TGTGGTTCGT GCCCAATCTC 
TTCGTGGCCC TTTTGGTGCT GGCCTTCGGT TCCTACTTTG CCCGCTTCGT GGGAGAGGCG 
GTGTCGAGCT ACTTCCGGGG CGCGCAGCTG CGCGACGCCA TGCTGCTGGG CCAGATCGCG 
CGCTACGCGG TCATGGCCTT CGTCATCCTG ATTGCGCTGG ACCAGGTCAA GGTGGGCGGC 
GACATCGTGC GCGAAAGCTT CCTGGTGATC CTGGCGGGCG TGGTGTTCGC GCTGGCGCTG 
GCCTTCGGCC TGGCGGGCAA GGATTGGGCG GCCGAGCAGA TCGAACGCTG GTGGCCGCGC 
CTGCCGAAGG ACGGCAGCGA CAGCAGCAGC GGCACGGCCA GGCCCAAGCC GAACCCGTTC 
GACGAGCGCC CGCCGCGCTG A 

 

Protein sequence

MDRFGIHLEP LNAMLYQVGA FVPRLAIALV VVLAGWLIAK AARFAVTKAL RAINFNVLTE 
RAGLDNFLRQ GGWPGDTCSL FGVLAYWLVI FAALLLAFNG MGLSYIADLL GRVVWFVPNL 
FVALLVLAFG SYFARFVGEA VSSYFRGAQL RDAMLLGQIA RYAVMAFVIL IALDQVKVGG 
DIVRESFLVI LAGVVFALAL AFGLAGKDWA AEQIERWWPR LPKDGSDSSS GTARPKPNPF 
DERPPR