| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1969 |
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| Symbol | |
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| ID | 7969762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2109056 |
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| End bp | 2110666 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792567 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_002943881 |
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| Protein GI | 239814971 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.786718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCCG ATGCTTGGTG GAAGAACGGA ATCGTCTATC AGATCTATCC GCGTTCATTC
CAGGACAGCG ACGGAGACGG CATCGGCGAC CTGCGTGGCA TCCGCAAGCG GCTCGATTAT
CTGGTCGAGC TTGGCGTGGA TGCCGTCTGG ATATCGCCGA TCTACCCCTC ACCAATGGCC
GACTTCGGGT ACGACATATC CGACTACTGC AACATCGATC CGCGCTTCGG CACGCTCGAG
GACTTCGACG CGCTCGCGGC GGAGTGCAAG GCGCGCGGCC TGAAGCTGGT GCTGGACTTC
GTGCCCAACC ACACCTCCGA CCAGCACCCG TGGTTCGTGC AGAGCCGCGC TTCGCGCGCG
AGCCCCAGGC GCGACTGGTA CCTGTGGCGC GACCCGGCGC CCGGTGGCGG CCCGCCCAAC
AACTGGCTCA GCAATTTCGG CGGTCCGGCA TGGACCTTCG ACGAAGCCAG CGGCCAGTAC
TACTGCCACT CCTTCCTGAA GGAGCAGCCC GACCTCAACT GGCGCAACCG CGAGGTGCGC
GAGGCAATGT ACGAGGTGCT GCGCTTCTGG CTGCGGCGCG GCGTGGACGG TTTCCGCATC
GACGTGCTCT ACCACCTCAT CAAGGACGAC CAGTTCCGCG ACAACCCGCC CAACCCGTCG
TTCCAGCCGG GGCAGGATCC TTCGCACCGG CTGCTGGCGC TCTACACGAC GGACCGGCCG
GAGATGCAGG ACATCGTGTT CGAGATGCGC CGCGTGGTCG ATGCATTCAG CAGCGAGGCT
TCGGCGCGCG TGCTGATCGG CGAACTCTAT CTTCCGCTCG AGCGGCTCAT GGCCTACTAC
GGGCTCACGT CGGAAGGCCT GCTGCAGGGC GTGCAGCTGC CGTTCAATTT CCAGCTCATT
GCGGCGCCGT GGCACGCGGC CGAGATCGAC CGCATCGTGC GCAGCTACGA AGCGGCGCTG
CCTCACGGCG CGGCGCCCAA CTGGGTGCTC GGCAACCACG ACAAGCCGCG CATCGCGAGC
CGCGTGGGGC AGGAGCGGGC GCGGCTCGCG GCCATGCTGC TGCTCACGCT GCGCGGCACG
CCCACGCTCT ACTACGGCGA CGAGATCGGC CTGACCGACG TTCCCATTCC GCCCGATGAG
GTGCAGGACC CGTTCGAGAA AAACGAGCCG GGCAAGGGCC TGGGGCGCGA TCCGCAGCGC
ACGCCCATGC AATGGAGCCG GGCCCACATG GCCGGCTTCA CCGACGGCAC GCCGTGGCTG
CGCCTGGGCG GCGACTGGGG CATGCGCAAC GTCGAAGCGC AGCTGGCCGA TCCGGCCTCG
ATGCTGCAGC TCTACAGGAA GCTCATCGCG CTGCGCCGCA AGGAACCCGC GCTGCACGAA
GGAACCCACG AACAGCTCCA CGCCGGCGAC GACGTGCTGG CCTATGCAAG AGCATCGGGA
ACGCGGCGGC TGATCGTGCT GCTGAACTTC TCGACCTCCG ACACCCGGAT CGCGGCCGAG
CTGCTGCCGC GCGAAGTGGT CGTGCTGGCC TCGACGCATC CTGAGCGCAC CGGAACGGTG
GCGGGCGAAC TGGTGCTGCA GCCGCTGGAG GGCGTGATCG TCGCGCAGTG A
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| Protein sequence | MSADAWWKNG IVYQIYPRSF QDSDGDGIGD LRGIRKRLDY LVELGVDAVW ISPIYPSPMA
DFGYDISDYC NIDPRFGTLE DFDALAAECK ARGLKLVLDF VPNHTSDQHP WFVQSRASRA
SPRRDWYLWR DPAPGGGPPN NWLSNFGGPA WTFDEASGQY YCHSFLKEQP DLNWRNREVR
EAMYEVLRFW LRRGVDGFRI DVLYHLIKDD QFRDNPPNPS FQPGQDPSHR LLALYTTDRP
EMQDIVFEMR RVVDAFSSEA SARVLIGELY LPLERLMAYY GLTSEGLLQG VQLPFNFQLI
AAPWHAAEID RIVRSYEAAL PHGAAPNWVL GNHDKPRIAS RVGQERARLA AMLLLTLRGT
PTLYYGDEIG LTDVPIPPDE VQDPFEKNEP GKGLGRDPQR TPMQWSRAHM AGFTDGTPWL
RLGGDWGMRN VEAQLADPAS MLQLYRKLIA LRRKEPALHE GTHEQLHAGD DVLAYARASG
TRRLIVLLNF STSDTRIAAE LLPREVVVLA STHPERTGTV AGELVLQPLE GVIVAQ
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