| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1947 |
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| Symbol | |
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| ID | 7971126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2085014 |
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| End bp | 2086921 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792546 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002943860 |
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| Protein GI | 239814950 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.118826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCATG AATCCACTTT CGAGGCGGCG CCCCTCCTGC ACGGGGACGT GGGCGCCGGG
CCGTCCGCCA ACGCGCTGAG CGGCGCGGCC GGGCGCGCCG ACCGCGTGCT CGGCGGCCTG
GTCGAGGCCG TGGCCGCGCT GCTGGTGCTG GCCGAGATCT GCGTGCTGTT CGCGGGCGTG
GTGTCGCGCT ATGTGTTCCA TGCGCCGCTG GTGTGGTCGG ACGAGCTCGC GTCCATCCTC
TTCCTGTGGC TCTCGATGCT CGGCGCGGTG GTGGCGCTGC GGCGCGGCGA GCACATGCGC
ATGACGGCGC TGCTGCAGAA GGTGCAGCCC TCGACCCGCG CCATGCTCGA CGCCTTTGCC
ATCGCGGCGT CGATCGCATT CCTGGTGCTG ATCGTCTGGC CCTCGGTCGA CTATGCGCAC
GAAGAATCGT TCATCGTCAC GCCCGCCTTG GAGATCAGCA ACGCCTGGCG CGCCGCGGCC
ATTCCGGCCG GCATCGCCGT CATGCTGGCG ATGGCGCTGC TGCGGCTCGT GCGCGTGTGC
ACCGGGCGGC AGATTGCCGT CGCGGTGCTC GGCATGGCGG CGCTGGTGGC GGCCTTCTGG
CTGGCGGCGC CGCTCTTTGC CACGCTCGGC AAGTTCAACC TGGTGATCTT CTTCGTGGTG
GTGGTGGCGG CCACCGTGCT CTCGGGCGTG CCCATCGCGT TCTCTTTTGC GCTGGCCACC
TTCGGCTACC TGGCGCTCAC CACGCGCACG CCGCTCCTGG TGATGGTGGG CCGGCTCGAC
GAAGGCATGT CACACCTGAT CCTGCTCGCG GTGCCGCTCT TCATCTTCCT GGGTGCGCTG
ATCGAAATGA CGGGCATGGC GCGCGCCATG ATCCAGTTTC TTGCGAGCCT GCTGGGCCAT
GTGCGCGGCG GCCTCTCGTA TGTGCTGATT GGCGCGATGT ACCTGGTGTC GGGCATCTCG
GGCTCCAAGA TCGCCGACAT GGCAGCCATT GCGCCCGTGC TGTTCCCCGA GATGGTCAAG
CGCGGCGCCA AGCCCGGCGA TCTGGTGGCG CTGCTGTCGG CCACCGGCGC GCAGACCGAG
ACCATTCCGC CATCGATCGT GCTCATCACC ATCGGCTCGG TCACGGGCAT CTCCATCGCG
GCGCTGTTCA CGGGCGGCCT GCTGCCGGCC GTGGTGCTGG GCGCCGCACT GTGCGTGGTG
GTGTGGTGGC GCTACCGGCG CGAAGACCTG AGCGGCGTGC AACGCCACAG CAAGCGCGAG
ATCGGCAAGC TGCTGCTGGT GGCGCTGCCG GCCGTGCTGC TGCCCTTCGT GATCCGCGCC
GCCGTGGTCG AGGGCGTGGC CACGGCCACC GAGGTGTCGA CCATCGGCAT CGTCTATTCG
GCCATCGTCG GGCTCTTCGT CTACCGGCAG TTCGACTGGA AGCGGCTCAA GCCGATGCTG
GTCGACACGG CCTCGCTCTC GGGCGCGATC ATCTTCATCG TGGGCTGCGC CACGGCCATG
GCCTGGGGCC TCACGCAGTC GGGCTTCTCG CAGGACCTGG CACGCGTCAT GGGCGCGCTG
CCGGGCGGCG CCTACGGCTT CCTGGCCGTG TCGATCGTCG CCTTCATCGT GCTGGGCAGC
GTGCTCGAGG GCATTCCGGC CATCGTGCTG TTCGGGCCGC TTCTCTTTCC CATTGCCAAG
GCCGCGGGCG TGCACGAGGT GCACTACGCC ATGGTGGTGA TCTTCGCGAT GGGCATCGGC
CTGTTCGCGC CGCCCTTCGG CGTGGGCTAC TACGGCGCCT GCGCCGTCAG CAAGGTCAGC
CCCGACGAAG GCATCAAGCA CATCTGGGGC TACATCGCCG CGATGCTGGT GGGCCTGGTG
ATCGTGGCCG CGTTCCCGTG GTTCTCGACC GGTTTTCTCA AGTTCTGA
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| Protein sequence | MVHESTFEAA PLLHGDVGAG PSANALSGAA GRADRVLGGL VEAVAALLVL AEICVLFAGV
VSRYVFHAPL VWSDELASIL FLWLSMLGAV VALRRGEHMR MTALLQKVQP STRAMLDAFA
IAASIAFLVL IVWPSVDYAH EESFIVTPAL EISNAWRAAA IPAGIAVMLA MALLRLVRVC
TGRQIAVAVL GMAALVAAFW LAAPLFATLG KFNLVIFFVV VVAATVLSGV PIAFSFALAT
FGYLALTTRT PLLVMVGRLD EGMSHLILLA VPLFIFLGAL IEMTGMARAM IQFLASLLGH
VRGGLSYVLI GAMYLVSGIS GSKIADMAAI APVLFPEMVK RGAKPGDLVA LLSATGAQTE
TIPPSIVLIT IGSVTGISIA ALFTGGLLPA VVLGAALCVV VWWRYRREDL SGVQRHSKRE
IGKLLLVALP AVLLPFVIRA AVVEGVATAT EVSTIGIVYS AIVGLFVYRQ FDWKRLKPML
VDTASLSGAI IFIVGCATAM AWGLTQSGFS QDLARVMGAL PGGAYGFLAV SIVAFIVLGS
VLEGIPAIVL FGPLLFPIAK AAGVHEVHYA MVVIFAMGIG LFAPPFGVGY YGACAVSKVS
PDEGIKHIWG YIAAMLVGLV IVAAFPWFST GFLKF
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