| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1937 |
|---|
| Symbol | |
|---|
| ID | 7971116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2071128 |
|---|
| End bp | 2072306 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792536 |
|---|
| Product | Glutamine--scyllo-inositol transaminase |
|---|
| Protein accession | YP_002943850 |
|---|
| Protein GI | 239814940 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACA CTAACTTTTC TCCTTGGCCC AGCTTCACCA CCGAAGAGGC CGAAGCCGTG
CAGCGCGTGC TGCTCTCCAA CAAGGTCAAC TACTGGACCG GGCAGGAATG CCGCGAGTTC
GAGAAGGAAT TCGCTTCGTG GACCGGCACC AAGCATGCCG TGGCGCTGGC GAATGGCACG
CTGGCGCTGG ACGTTGCGCT GAAGGCGCTG GGCATCGGTC CCGGCGACGA AGTGGTGGTT
ACACCGCGCA CCTTCATGGC AAGCGTTTCT TGCGTGGTCA ATGCAGGTGC CACGCCGGTG
TTCGCGGATG TCGAGGCCGA CAGCGGCAAT CTCTCAGCGG CCACCATTTC GCGGGTGCTC
ACCCCGCGCA CCCGCGCAGT CGTCTGCGTG CATCTGGGCG GTTGGCCTTG CGACATGGAT
CCGATCATGG CGCTGGCCGA ACAGCATGGG TTCAAGGTCA TCGAAGACTG CGCACAGGCA
CACGGCTCGC ACTACAAGGG GCGAGCGGTC GGCTCCATCG GGCACGTGGG CGCCTGGTCC
TTCTGCCAAG ACAAGATCAT GACCACGGGC GGAGAGGGCG GCATGGTCAC TACCAACGAT
GAATCGCTCT GGCGCGCCAT GTGGGAATTC AAGGACCACG GCAAGAGCCA CGATGCGGTG
TTCAAGCGCG AGCATCCGCC CGGCTTCCGT TGGCTGCATG AAAGCTTCGG CACCAACTGG
CGCATGCTGG AGATGCAGGC CGTGATCGGC CGCATTCAGT TGCGCCGCAT GGCTGACTGG
ACCGCGCTGC GCACGCGCCA TGCGCAGGCG CTGTGGGCGG CCTGCCGCCC GCATGCGGCG
GTGCGCGTGC CGACTCTGCC CGAAGGCAGC CTGCATGCGC ACTACAAGTG CTATGCCTAC
GTTCAGCCCG AGCGGCTGGC CCCGGGCTGG AACCGTGACC GTATCGTGAA TGCCATCCAG
GCGCTGGGCG TGCCTTGCTA CCAGGGCTCC TGCTCGGAGG TGTACTTGGA AAAGGCTTTC
GATGGCACCG GTTGGCGGCC GGCGGCGCGC TTGCCGGTGG CGCGTGCCCT GGGCGAAACC
AGCGTCATGT TCCTGGTGCA TCCAACGCTC ACCGCGGCGG AAATGGACGC CAGCTGCGCG
GCCATTGGGC AAGTGCTGCA AGAAGCGAGC GCCACATGA
|
|---|
| Protein sequence | MLNTNFSPWP SFTTEEAEAV QRVLLSNKVN YWTGQECREF EKEFASWTGT KHAVALANGT
LALDVALKAL GIGPGDEVVV TPRTFMASVS CVVNAGATPV FADVEADSGN LSAATISRVL
TPRTRAVVCV HLGGWPCDMD PIMALAEQHG FKVIEDCAQA HGSHYKGRAV GSIGHVGAWS
FCQDKIMTTG GEGGMVTTND ESLWRAMWEF KDHGKSHDAV FKREHPPGFR WLHESFGTNW
RMLEMQAVIG RIQLRRMADW TALRTRHAQA LWAACRPHAA VRVPTLPEGS LHAHYKCYAY
VQPERLAPGW NRDRIVNAIQ ALGVPCYQGS CSEVYLEKAF DGTGWRPAAR LPVARALGET
SVMFLVHPTL TAAEMDASCA AIGQVLQEAS AT
|
|---|
| |