| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1922 |
|---|
| Symbol | |
|---|
| ID | 7971101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2056310 |
|---|
| End bp | 2057038 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792521 |
|---|
| Product | P pilus assembly protein chaperone PapD-like protein |
|---|
| Protein accession | YP_002943835 |
|---|
| Protein GI | 239814925 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCC TGCTCCGCCA TACCGCCGTT CTCGCGCTTG CCCTGGTGCA GGCGGTTGCA
TCGGCGAGCG GGCTGCAGGT GTCGCCGGTC ACGCTGACGC TGCAGGCCAC GCAAAACGCC
GAAGGCCTTT GGCTCAGCAA CACGGGCGAC ACGGTGGTGC ATGCGCAGGT GCGCGTCTAT
CACTGGGCGC AGGAGAACGG CGCAGAAAAG CTGACGCCCT CGCGCGAACT GCTGGTCAGT
CCGCCGATGG TGCAGCTGGC CGCTTCCGAC AGGCAGCTGA TCCGCGTGAT TCGCACGGGC
GTTCCGGCCG GCACGGTCGA AGGCTCTTAC CGGGTGGTGA TCGACGAGCT GCCGGTGGAG
ATGAAGGAAA AGAAGGGCCT GCAGCTGGTG CTGCGCTATT CGGTTCCGAT CTTCATTGCA
GCGGCGGGCG CGCAGTCGCC CGAGCCGCAG CTCGCATGGT CGCTGCGCCG CGAAGAAGGC
CAGGCCGTGC TCGAAGTGGC CAACACCGGC GGCATGCATG CGCAGCTTGC CGATGTGGAA
TTTGTCGATA CGGTGGGCCG CCGCACGCCG GTGCATGCGG GCCTGCTGGG CTACGTTTTG
CCGGGTGCGC GCATGCGTTG GCCACTGAAG ACTTCCGCGG AGGCTTTTGC CCTCGGCGGC
ATCCTGGAAA CGAAGATCAA TGGCAACGCG ACGCAGGAAA AAATCCCGCC GCTCCCACGC
GCCCGCTGA
|
|---|
| Protein sequence | MRRLLRHTAV LALALVQAVA SASGLQVSPV TLTLQATQNA EGLWLSNTGD TVVHAQVRVY
HWAQENGAEK LTPSRELLVS PPMVQLAASD RQLIRVIRTG VPAGTVEGSY RVVIDELPVE
MKEKKGLQLV LRYSVPIFIA AAGAQSPEPQ LAWSLRREEG QAVLEVANTG GMHAQLADVE
FVDTVGRRTP VHAGLLGYVL PGARMRWPLK TSAEAFALGG ILETKINGNA TQEKIPPLPR
AR
|
|---|
| |