| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1921 |
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| Symbol | |
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| ID | 7971100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2053948 |
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| End bp | 2056275 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792520 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_002943834 |
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| Protein GI | 239814924 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTTG CCGCCCAGGC TGAGAATGCC GCAGCCGGCT CGAGCGCATC TTTGGTCGCG
CCCGCGGAGG GCGAGCTGGC CGGCCCCACC GGCAGCGACC TTTACCTGGA CCTGAGCCTC
AACGGCAACC CGCAGGGGCT GGTGCACTTT GGCCTGCGCG GCCAGGAGCT GTGGGCCAGT
GCCGCCACGC TGCGGCAGCT GGGCTTTGTG CTGCCGGCGG GCGTGTCAGA CCCGGTGCGG
CTCAAGAGCC TTCCGGGGCT GCAGATCAAG TACGACGCTG CAACCCAGAG CGTTGAAATC
AATGCCTCGG CCGAGGTGCT GCGCCTGCCC ACCACGGTGG TGGACACATC GACCACCATC
GTGCCCAAGG CCAGTGCTTC GCCCGGCCTG CTGCTCAACT ACGACCTGTA CGGCACGCAG
GGGCGCGGCA ACACGTCGAG CCTGAACGCG CTGACCGAAC TGCGCGCGTT CACCGGAAGC
ACGGTGCTCA GCAACACGAT GATGTCGCGC TCGACCCGCC TCCCAAGCGA AGGCTGGACG
CACGACTCGG TGCGGCTGGA CACGACGCTG AGCACCTCTT TTCCTGAAGA CATGCTGACG
CTGCGCGTGG GCGACACGAC CACGGCCTCG CTGCCATGGT CGCGCTCCAC GCGCATCGGC
GGCATCCAGC TGTCGCGCAA CTTTGCGCTG CAGCCCTATC GCACCACCAC TCCGCTGCCC
GCCTTCCTGG GGGCGGCCGC GCTGCCTTCG CAGGTGGAGC TGTACATCAA CGGCATGCGG
CAGTACACGG GCCAGGTGCC CGCGGGGCCG TTCCAGCTGA AGACGGTGCC CAGCATCAAT
GGCGCGGGCA ATGCGCAAGT GGTGTTGACC GATGCCTTCG GCCGTGCAAC GACGCTCGAC
TTTTCCTTGT ACGACACGCA GCGGCTGCTG GAAGCGGGCC TGTCGGACTG GTCGGTGGAC
CTGGGCATGG TGCGCAAGGA TTACGGCCTG CGCTCGTTCC AATACGGCAG CGATCCGGCG
GCCAGCGGCA CCTGGCGCTA TGGCGTGAAC AACAGCTTCA CGGTGGAAGC GCACGGCGAA
GCCACCAAGG GATTGGTCAA GGCCGGCGTG GGCGGCGCCT GGCTGCTCGG CCAGAGCGGC
GTGCTGGCGG GCGCGGTGGC GCACAGCAGC TACCGCTCGG AGCAAGGCTC GCTGGTCAAC
CTGGGCTACA GCTGGCGCGA CAACCACTTC AATTTTGCGG TCGAGGGCAC GCGCACTTAC
GGCGAATACC GCGACGTGGC GTCGCTGTAC GGCAGCGCGC CGCCGCGCGG ATCGGGCCGC
GCATCGGTCG GCTACACCAC GGGGAGCTTT GGCAGCTTTG GCCTGAGCTA CCTTTACCTG
CGCTATCCCG CACAGGCGGC GACGCGGCTG GCCAGCGTCT ACTGGTTCAG CGCGATTGGC
CGCAGCGCCT CGGTGAACGT GAGCCTCAAC CAGAACCTGG ACAACCGGCG CGAACGCAGC
CTGTACGTGG GCTTTACCTG GGCGCTGGAC GGCAAGATCA CGGCCAGCAC GGGCGTGCAG
CGCGATGGCG ACCGCACCAC CTTCTCGGCC GACGCGCAAA GCTCGATTCC GGGCGAAGGC
GGCATCGGCT GGCGCGCGGG CCTGCGCCAG GGCGGCGGCC AGAACGGCGG CCAGGCCGAG
GTCGACTACC TGGGCCGCTA CGGCCGCGCG ATGGCCGGCA TCAGCGTGCT GGGCGACAGC
CGCTACGCCT ACGCGGGCGC CACCGGCTCG ATCGCGTTCA TGGGCGGCCA GCCCTTTGCA
GCGCGGCGCA TCGACGACGC CTTTGCGGTG GTTTCCACCG ACGGCATCGC AGGCGTGCCG
GTGAGGCTGG AGAACCGCGA CATCGGTACG ACGGACAGCC ACGGCATGCT GCTGGTGGCG
CCGCTGCGGG CCTACCAGAA CAACCAGCTG TCGATCGACC CGATGCAGCT GCCGGCCGAC
GTGAAGATCG AGCGCGTGAA GACGGTGGCG ACGCCGAGCG ACCGCGCTGG CACCTTGGTG
CGCTTTGGCA TCACGCCCGT GAATGCGGCG GCGCTGCTGC TGGCGGACGA GGCGGGCAAG
CCGCTGCCGC TGGGCAGCCG GGTGCGCGTG AATGGCGGCA CCGGCGAGCC CGCGCTGGTG
GGCTTTGACG GCGCGGTGTA CCTGGAGTCG CTGCAGGCGC GCAACACGCT CGAGGTGCAG
ACGCCGGGCG GCGGCCGCTG CCGCGTGAGC TTCGACTATC GCAAGGAAGG CGCAGGCATT
CCGCAGATCG GGCCGCTGCG CTGCATCAGG GAGGGGAAGA CGCCATGA
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| Protein sequence | MSFAAQAENA AAGSSASLVA PAEGELAGPT GSDLYLDLSL NGNPQGLVHF GLRGQELWAS
AATLRQLGFV LPAGVSDPVR LKSLPGLQIK YDAATQSVEI NASAEVLRLP TTVVDTSTTI
VPKASASPGL LLNYDLYGTQ GRGNTSSLNA LTELRAFTGS TVLSNTMMSR STRLPSEGWT
HDSVRLDTTL STSFPEDMLT LRVGDTTTAS LPWSRSTRIG GIQLSRNFAL QPYRTTTPLP
AFLGAAALPS QVELYINGMR QYTGQVPAGP FQLKTVPSIN GAGNAQVVLT DAFGRATTLD
FSLYDTQRLL EAGLSDWSVD LGMVRKDYGL RSFQYGSDPA ASGTWRYGVN NSFTVEAHGE
ATKGLVKAGV GGAWLLGQSG VLAGAVAHSS YRSEQGSLVN LGYSWRDNHF NFAVEGTRTY
GEYRDVASLY GSAPPRGSGR ASVGYTTGSF GSFGLSYLYL RYPAQAATRL ASVYWFSAIG
RSASVNVSLN QNLDNRRERS LYVGFTWALD GKITASTGVQ RDGDRTTFSA DAQSSIPGEG
GIGWRAGLRQ GGGQNGGQAE VDYLGRYGRA MAGISVLGDS RYAYAGATGS IAFMGGQPFA
ARRIDDAFAV VSTDGIAGVP VRLENRDIGT TDSHGMLLVA PLRAYQNNQL SIDPMQLPAD
VKIERVKTVA TPSDRAGTLV RFGITPVNAA ALLLADEAGK PLPLGSRVRV NGGTGEPALV
GFDGAVYLES LQARNTLEVQ TPGGGRCRVS FDYRKEGAGI PQIGPLRCIR EGKTP
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