Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1905 |
Symbol | |
ID | 7971084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2036880 |
End bp | 2037740 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792505 |
Product | lipoprotein, YaeC family |
Protein accession | YP_002943819 |
Protein GI | 239814909 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.279671 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCCGCT TCCCATCGCT TTCCGCCGCG CTGTCGCGCC GCCGCCTGCT GCAATTCGCC TCGGCCGCCG CCACCGCCGG CGCGGGCCTA CCCGCCTTCG CGGCCCTCAA GGAGCCGCCC GGCACCACCA AGGTCCTGAA GGTAGGCGTC ACGACCGGGC CGCACGAGCA GACCTTCGAG GTCGCCAAGC GCGTGGCCGA GCGCGACTAC GGCCTGAAGA TCCAGATCGT GCCCTTCACC GACTACAGCC GGCCCAACGC CGCGCTCGAT GCCGGCGACC TGGACGCCAA CAGCTTCCAG CACCGGCCCT TCCTCGCGGC GCAGGTGCGT TCGCGCGGCT ACAGGATCGT CGGCTTCGGC CGCACCTGGA TCGGCCCCAT CGCGATCTAT TCGCGCAAGT TCAAATCGTT CAAGGACCTG CCCGAGGGCG CCAGCATCGC CATTCCCAAC GACCCGTCGA ACGAAAGCCG GGTGCTGTTG CTGCTGCAGA AGGCCGGCGC CATCAAGCTC AAGAGCGGCA TCGACCCGAT CGCGGGCATC AACGCCACGC CGCGCGACAT CACCGAGAAC CCGCGGAAGT TCCGCTTCGT CGAGATCGAG GCCGCGCAGC TGCCGCGCAC GCTCGATGAC ACCGACGCCT CGGCCGTCAA CGCCGACTAT GCCAACAAGG CCGGCCTCAA TCCGGCGCGC GACGGCATCC TGGTCGAGGA CAAGGAAGGC CCCTATGCCT GCCTGATCGC GGTGCGCGAA CAGGACAAGG AACAGCCCTG GGTGCAGCAG CTGGTCAAGG CCTACCAGAC CGACGAGGTG CGCGACTTCA TCGTCAAGAC CTTCGCGGGC GGCGTGCTGC CGGCGTTCTG A
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Protein sequence | MSRFPSLSAA LSRRRLLQFA SAAATAGAGL PAFAALKEPP GTTKVLKVGV TTGPHEQTFE VAKRVAERDY GLKIQIVPFT DYSRPNAALD AGDLDANSFQ HRPFLAAQVR SRGYRIVGFG RTWIGPIAIY SRKFKSFKDL PEGASIAIPN DPSNESRVLL LLQKAGAIKL KSGIDPIAGI NATPRDITEN PRKFRFVEIE AAQLPRTLDD TDASAVNADY ANKAGLNPAR DGILVEDKEG PYACLIAVRE QDKEQPWVQQ LVKAYQTDEV RDFIVKTFAG GVLPAF
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