Gene Vapar_1894 details

Gene Information

• Locus tag: Vapar_1894
• ID: 7971073
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2024950
• End bp: 2026842
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644792495
• Product: cysteine desulfurase, SufS subfamily
• Protein accession: YP_002943809
• Protein GI: 239814899
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0520] Selenocysteine lyase
• TIGRFAM ID: [TIGR01979] cysteine desulfurases, SufS subfamily

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAGCG CCATGTTCTC CGCACCGCCG GGCGCGCAGT TTCCTGCCAA CATCGCGCCC 
CCGGGGTCGC CGCTGGCGAG CCCCGCGGGC TTCGGGCCCA GCGTGCCCGG CACGCCGATT 
CCGCAGGGGC AGATTCCGGG CGCCAACCTG CTGCCGGCAT CGCCCACGCA GCTGCCTTCG 
CTCGCGAATC GCGCGCCGGC GCTGGCGCCG CACGCGGTGG CGGGCAATGG CGTGCCCGAC 
ACGGTGCTGT CGGTGGCGCC GGCTTTCGAG CCGCGTTCGG GCGGTGCGGT GCAGGGCGTG 
CCGCAGCAAG TCGGCGCACC CGTGGCGCCG CAGGCCGGGG CCTCGCCGTT CTACTTCTTG 
AGCGACGGTT ACGGCCATCC ATCCGCTGGC ACGACCCCCG CCATCTCGCC CCCCGGGCAG 
GTGTTGCCCC CTCTCCCGCT TGCGGGGGAG GGCGGGAGCG TTCAACCACT TGCTGGCGTT 
CCGTCGCCGC AGCCCCTCAC CCCAGCCCTC TCCCCGGAGG GGCGAGGGAG CCAATCCCGG 
ATGCAAGGGA GTGAGAAGCC GCAGTTCTAC TTCGTCGACG CGGTGCGCCT GCCCAATGGC 
TTCGTCACGC CGGCCAAGCC CGATCCGCGC GGGCCCGATG CGGTGCCGCT CGCGGGCAGC 
GGCCGGCATC CGCCGTTCGA CGTCCACGCC GTGCGCCGCG ACTTCCCGAT CCTGCAGGAG 
CGCGTGAACG GCCGGCAGCT CGTGTGGTTC GACAACGCCG CCACCACGCA CAAGCCGCAA 
TCGGTCATCG ACCGCATCGC GTACTTCTAC GAACACGAGA ACTCCAACAT CCACCGCGCG 
GCGCATGAAC TGGCCGCACG CGCCACCGAT GCCTACGAAG GCGCGCGTGA GCGCGTGCGA 
AAGTTCATCA ACGCACCCGA GGTCGAAGAA GTGATCTTCG TGCGCGGCAC CACCGAGGCC 
ATCAACCTCG TGGCCAAGAG CTGGGGCGGG CAGCATGTGG GCGAGGGCGA CGAGATCATG 
GTCTCCAACC TCGAGCACCA CGCCAACATC GTGCCGTGGC AGCAGCTCGC CGCCGCCAAG 
GGCGCGAAGC TGCGCGTCAT CCCGGTGGAC GATTCGGGCC AGGTGCTGCT CGACGAATAC 
CGCAAGCTGC TGAACGACCG CACGAAGATC GTCGCCGTCA CGCAGGTCTC GAACGCGCTG 
GGCACCGTGG TGCCGGTGAA GGAGATCGTC GAGCTGGCGC ACCGCGCGGG CGCCAAGGCG 
CTGGTCGACG GCGCGCAATC GGTCTCGCAC ATGCGGGTCG ATGTGCAGGA CATCGGCGCC 
GACTTCTTCG TGTTCTCCGG CCACAAGGTG TTCGGCCCGA CCGGCATCGG CGTGGTCTGG 
GGCAAGCGCG AAGTGCTGGA GGACATGCCG CCCTGGCAGG GCGGCGGCAA CATGATTGCC 
GACGTAACTT TCGAGAAGAC CGTGTTCCAG CCGATCCCGA ACAAGTTCGA GGCCGGCACC 
GGCAACATCG CCGATGCCGT GGGGCTGGGC GCGGCCATCG ACTACGTGAA CAAGGTCGGC 
ATCGAGAACA TCGCGCGCTA CGAGCACGAC CTGCTCGTGT ACGGCATGGC GCAGCTCGGC 
GCGATTCCGG GTGTGCGGCT GATCGGCACG GCGGCCGACA AGGCCAGCGT GATGTCCTTC 
GTGCTCGACA GCTACACCAC CGAAGAGGTG GGCCACGCGC TCAACGACGA AGGCATTGCC 
GTGCGCACGG GCCACCATTG CGCGCAGCCG ATCCTACGCC GCTTCGGTGT CGAGACCACC 
GTGCGGCCGT CGCTGGCGTT CTACAACACC TTCGACGAGA TCGACCGGCT GGTGTCGGTG 
GTGCGGCGAT TGGCAGGGCA GCGGCGCGGC TGA 

 

Protein sequence

MASAMFSAPP GAQFPANIAP PGSPLASPAG FGPSVPGTPI PQGQIPGANL LPASPTQLPS 
LANRAPALAP HAVAGNGVPD TVLSVAPAFE PRSGGAVQGV PQQVGAPVAP QAGASPFYFL 
SDGYGHPSAG TTPAISPPGQ VLPPLPLAGE GGSVQPLAGV PSPQPLTPAL SPEGRGSQSR 
MQGSEKPQFY FVDAVRLPNG FVTPAKPDPR GPDAVPLAGS GRHPPFDVHA VRRDFPILQE 
RVNGRQLVWF DNAATTHKPQ SVIDRIAYFY EHENSNIHRA AHELAARATD AYEGARERVR 
KFINAPEVEE VIFVRGTTEA INLVAKSWGG QHVGEGDEIM VSNLEHHANI VPWQQLAAAK 
GAKLRVIPVD DSGQVLLDEY RKLLNDRTKI VAVTQVSNAL GTVVPVKEIV ELAHRAGAKA 
LVDGAQSVSH MRVDVQDIGA DFFVFSGHKV FGPTGIGVVW GKREVLEDMP PWQGGGNMIA 
DVTFEKTVFQ PIPNKFEAGT GNIADAVGLG AAIDYVNKVG IENIARYEHD LLVYGMAQLG 
AIPGVRLIGT AADKASVMSF VLDSYTTEEV GHALNDEGIA VRTGHHCAQP ILRRFGVETT 
VRPSLAFYNT FDEIDRLVSV VRRLAGQRRG