Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1873 |
Symbol | rplT |
ID | 7971051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2005310 |
End bp | 2005669 |
Gene Length | 360 bp |
Protein Length | 119 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644792474 |
Product | 50S ribosomal protein L20 |
Protein accession | YP_002943789 |
Protein GI | 239814879 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0292] Ribosomal protein L20 |
TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.855478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGCG TCAAACGTGG TGTAACGGCT CGCGCCCGCC ACAAGAAAGT TCTCGCACTC GCCAAGGGTT TCCGCGGTCG CCGCGGCAAT GTCTTCCGCA TCGCCAAACA GGCGGTGATG AAGGCTGGGC AATACGCCTA CCGTGACCGC CGCACCAAGA AGCGCGTTTT CCGTCAACTG TGGATCGCGC GTATCAACGC CGCCTCGCGC GAACTGGGCC TGACCTACAG CCAGTTCGCC AACGGCATCC GCAAGGCCGG GATCGAGATC GACCGCAAGA TGCTTGCGGA CATCGCAGTG CACGACAAGG CCGCTTTTGC CGGCATCGTG GAGCAGGTCA AGGCCAAGCT GGCTGCTTGA
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Protein sequence | MPRVKRGVTA RARHKKVLAL AKGFRGRRGN VFRIAKQAVM KAGQYAYRDR RTKKRVFRQL WIARINAASR ELGLTYSQFA NGIRKAGIEI DRKMLADIAV HDKAAFAGIV EQVKAKLAA
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