Gene Vapar_1873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1873 
SymbolrplT 
ID7971051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2005310 
End bp2005669 
Gene Length360 bp 
Protein Length119 aa 
Translation table11 
GC content62% 
IMG OID644792474 
Product50S ribosomal protein L20 
Protein accessionYP_002943789 
Protein GI239814879 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0292] Ribosomal protein L20 
TIGRFAM ID[TIGR01032] ribosomal protein L20 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.855478 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTCGCG TCAAACGTGG TGTAACGGCT CGCGCCCGCC ACAAGAAAGT TCTCGCACTC 
GCCAAGGGTT TCCGCGGTCG CCGCGGCAAT GTCTTCCGCA TCGCCAAACA GGCGGTGATG
AAGGCTGGGC AATACGCCTA CCGTGACCGC CGCACCAAGA AGCGCGTTTT CCGTCAACTG
TGGATCGCGC GTATCAACGC CGCCTCGCGC GAACTGGGCC TGACCTACAG CCAGTTCGCC
AACGGCATCC GCAAGGCCGG GATCGAGATC GACCGCAAGA TGCTTGCGGA CATCGCAGTG
CACGACAAGG CCGCTTTTGC CGGCATCGTG GAGCAGGTCA AGGCCAAGCT GGCTGCTTGA
 
Protein sequence
MPRVKRGVTA RARHKKVLAL AKGFRGRRGN VFRIAKQAVM KAGQYAYRDR RTKKRVFRQL 
WIARINAASR ELGLTYSQFA NGIRKAGIEI DRKMLADIAV HDKAAFAGIV EQVKAKLAA