Gene Vapar_1871 details

Gene Information

• Locus tag: Vapar_1871
• ID: 7971049
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2004366
• End bp: 2004911
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644792472
• Product: translation initiation factor IF-3
• Protein accession: YP_002943787
• Protein GI: 239814877
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0290] Translation initiation factor 3 (IF-3)
• TIGRFAM ID: [TIGR00168] translation initiation factor IF-3

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCCGG AAGTCCGCCT TGTAGGCCCG GAAAACGAGC CATTGGGTGT TATGAGTCTC 
TCCGAGGCCT TGCGCCTCGC CGGTGAGGCT GACGTGGATC TGGTAGAGGT CGTTGCCGCG 
GCCAATCCGC CCGTGTGCCG TCTGATCGAG TACGGCAAGT TCAAGTACCA CGAGCAGAAG 
AAGGCGGCCG AGGCCAAGTC GAAGCAGAAG GTCATCGAGG TCAAGGAAAT CAAGTTCCGC 
CCCGGTACCG ACGACGGCGA CTACAACATC AAGATGCGCA ACATCAAGCG CTTTCTTGAA 
GAGGGCGACA AATGCAAGAT CACGCTGCGC TTCCGTGGCC GCGAGATCAC GCACCAGGAA 
CTCGGCCTGG CGCTGCTGCA GCGGATCCGC GATGAGCTGG GCGACCTGAT CGTCGTGGAG 
CAGTTTCCGA AGCTCGAAGG CCGGCAGATG ATCATGATGA TCGCGCCGGG CCGCAAGAAG 
CCGGGCGGCG GCGGTGGTGC CGCAAAGCCG GCTTCTTCGG AAGCTTCGGC GCCCGCGGCG 
GCCTGA 

 

Protein sequence

MAPEVRLVGP ENEPLGVMSL SEALRLAGEA DVDLVEVVAA ANPPVCRLIE YGKFKYHEQK 
KAAEAKSKQK VIEVKEIKFR PGTDDGDYNI KMRNIKRFLE EGDKCKITLR FRGREITHQE 
LGLALLQRIR DELGDLIVVE QFPKLEGRQM IMMIAPGRKK PGGGGGAAKP ASSEASAPAA 
A