Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1830 |
Symbol | |
ID | 7970847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1962164 |
End bp | 1963393 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792431 |
Product | aminotransferase AlaT |
Protein accession | YP_002943746 |
Protein GI | 239814836 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.841388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGCAGT TCAAGAAATC GGCCAAGCTG GCCAACGTGC TCTACGACAT CCGCGGCCCC ATCATGGACG CCGCGAAGCA GATGGAGGAA GAGGGCCAGA AGATCATCAG GCTCAACATC GGCAACCTGG CCGTGTTCGG CTTCGACGCG CCGGAAGAGG TCCAGCAGGA CATGATCCGC AACCTGCCGG GGTCGGCCGG CTATTCGGAC AGCAAGGGCA TCTTTGCGGC CCGCAAGGCC GTGATGCACG AAACCCAGAA GCAGGGTGTT GCGGGCGTCA CGCTCGAGGA CATCTACCTG GGCAACGGCG CGAGCGAGCT GATCGCCATG GCCACCAACG CGCTGCTGAA CGACGGCGAC GAAATGCTGC TTCCGGCCCC TGACTATCCG CTGTGGACGG CCGCCTCGAG CCTCTCGGGC GGCAAGCCGG TGCACTACCT CTGCGACGAA GCCAACGGCT GGATGCCCGA CCTGGACGAC ATCCGCGCCA AGATCACGCC CCGCACCAAG GGCATCGTGG TCATCAACCC CAACAACCCG ACCGGTGCGC TCTATTCCGA CGAACTGCTC AAGAGCATCG TCGACATTGC GCGCGAGCAC CACCTGGTGA TCTTCGCCGA CGAGGTCTAC GACAAGGTGC TGTACGACGG CGTGCGGCAC ACCGCGATCG CGAGCCTGTC GACCGACGTG CTCACGCTGA CCTTCAACTC GCTGTCCAAG AGCTACCGCT CGTGCGGCTA CCGCGCGGGC TGGATGGTGG TTTCGGGCGA CAAGGCGCGG GCGCAGGACT ACATCGAGGG CCTGAACATG CTCTCGAACA TGCGCCTGTG CGCCAACGTG CCGGGGCAAT GGGCCATCCA GACCGCACTC GGCGGCTACC AGAGCATCAA CGACCTGGTC GGCGACGGCG GCCGCCTGCG GCGCCAGCGC GACCTGGCCT ACGAGCTCAT CACGGCCATT CCGGGCGTGA GCTGCGTCAA GCCGAGCGCC GCGCTCTACA TGTTCCCCAA GCTCGATCCC AAGGTCTACC CGATCACCGA CGACCGCCAG TTCTTCCTCC AACTGCTGAG GGAGACCAAG GTGATGCTGG TGCAGGGCAC GGGCTTCAAC TGGGCCACGC CGGACCACTT CCGCATCGTG TTCCTGCCCC ACGAGGACGA CCTGCGCGAA GCGATCAACC GCATTGCCAG GTTCCTGGAG CTGTACCGCC TGCGCAGCAA GACGGATTGA
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Protein sequence | MKQFKKSAKL ANVLYDIRGP IMDAAKQMEE EGQKIIRLNI GNLAVFGFDA PEEVQQDMIR NLPGSAGYSD SKGIFAARKA VMHETQKQGV AGVTLEDIYL GNGASELIAM ATNALLNDGD EMLLPAPDYP LWTAASSLSG GKPVHYLCDE ANGWMPDLDD IRAKITPRTK GIVVINPNNP TGALYSDELL KSIVDIAREH HLVIFADEVY DKVLYDGVRH TAIASLSTDV LTLTFNSLSK SYRSCGYRAG WMVVSGDKAR AQDYIEGLNM LSNMRLCANV PGQWAIQTAL GGYQSINDLV GDGGRLRRQR DLAYELITAI PGVSCVKPSA ALYMFPKLDP KVYPITDDRQ FFLQLLRETK VMLVQGTGFN WATPDHFRIV FLPHEDDLRE AINRIARFLE LYRLRSKTD
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