Gene Vapar_1830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1830 
Symbol 
ID7970847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1962164 
End bp1963393 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content65% 
IMG OID644792431 
Productaminotransferase AlaT 
Protein accessionYP_002943746 
Protein GI239814836 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.841388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGCAGT TCAAGAAATC GGCCAAGCTG GCCAACGTGC TCTACGACAT CCGCGGCCCC 
ATCATGGACG CCGCGAAGCA GATGGAGGAA GAGGGCCAGA AGATCATCAG GCTCAACATC
GGCAACCTGG CCGTGTTCGG CTTCGACGCG CCGGAAGAGG TCCAGCAGGA CATGATCCGC
AACCTGCCGG GGTCGGCCGG CTATTCGGAC AGCAAGGGCA TCTTTGCGGC CCGCAAGGCC
GTGATGCACG AAACCCAGAA GCAGGGTGTT GCGGGCGTCA CGCTCGAGGA CATCTACCTG
GGCAACGGCG CGAGCGAGCT GATCGCCATG GCCACCAACG CGCTGCTGAA CGACGGCGAC
GAAATGCTGC TTCCGGCCCC TGACTATCCG CTGTGGACGG CCGCCTCGAG CCTCTCGGGC
GGCAAGCCGG TGCACTACCT CTGCGACGAA GCCAACGGCT GGATGCCCGA CCTGGACGAC
ATCCGCGCCA AGATCACGCC CCGCACCAAG GGCATCGTGG TCATCAACCC CAACAACCCG
ACCGGTGCGC TCTATTCCGA CGAACTGCTC AAGAGCATCG TCGACATTGC GCGCGAGCAC
CACCTGGTGA TCTTCGCCGA CGAGGTCTAC GACAAGGTGC TGTACGACGG CGTGCGGCAC
ACCGCGATCG CGAGCCTGTC GACCGACGTG CTCACGCTGA CCTTCAACTC GCTGTCCAAG
AGCTACCGCT CGTGCGGCTA CCGCGCGGGC TGGATGGTGG TTTCGGGCGA CAAGGCGCGG
GCGCAGGACT ACATCGAGGG CCTGAACATG CTCTCGAACA TGCGCCTGTG CGCCAACGTG
CCGGGGCAAT GGGCCATCCA GACCGCACTC GGCGGCTACC AGAGCATCAA CGACCTGGTC
GGCGACGGCG GCCGCCTGCG GCGCCAGCGC GACCTGGCCT ACGAGCTCAT CACGGCCATT
CCGGGCGTGA GCTGCGTCAA GCCGAGCGCC GCGCTCTACA TGTTCCCCAA GCTCGATCCC
AAGGTCTACC CGATCACCGA CGACCGCCAG TTCTTCCTCC AACTGCTGAG GGAGACCAAG
GTGATGCTGG TGCAGGGCAC GGGCTTCAAC TGGGCCACGC CGGACCACTT CCGCATCGTG
TTCCTGCCCC ACGAGGACGA CCTGCGCGAA GCGATCAACC GCATTGCCAG GTTCCTGGAG
CTGTACCGCC TGCGCAGCAA GACGGATTGA
 
Protein sequence
MKQFKKSAKL ANVLYDIRGP IMDAAKQMEE EGQKIIRLNI GNLAVFGFDA PEEVQQDMIR 
NLPGSAGYSD SKGIFAARKA VMHETQKQGV AGVTLEDIYL GNGASELIAM ATNALLNDGD
EMLLPAPDYP LWTAASSLSG GKPVHYLCDE ANGWMPDLDD IRAKITPRTK GIVVINPNNP
TGALYSDELL KSIVDIAREH HLVIFADEVY DKVLYDGVRH TAIASLSTDV LTLTFNSLSK
SYRSCGYRAG WMVVSGDKAR AQDYIEGLNM LSNMRLCANV PGQWAIQTAL GGYQSINDLV
GDGGRLRRQR DLAYELITAI PGVSCVKPSA ALYMFPKLDP KVYPITDDRQ FFLQLLRETK
VMLVQGTGFN WATPDHFRIV FLPHEDDLRE AINRIARFLE LYRLRSKTD