Gene Vapar_1809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1809 
Symbol 
ID7970826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1944951 
End bp1945637 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content66% 
IMG OID644792410 
Product2OG-Fe(II) oxygenase 
Protein accessionYP_002943725 
Protein GI239814815 
COG category[S] Function unknown 
COG ID[COG3128] Uncharacterized iron-regulated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.893749 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTGC ACATCAAACA GGTGCTCACC TCCGAGGAGC TGCGCGAGGC CCGCGGGATC 
CTCGCCGACG CCCCCTGGGG CGACGGCCGG ATCACCGCCG GCAGCCAGTC GGCGCATGCG 
AAGAACAACG AACAGTTGAG GGAAGACTGC GAAGAAACCC GCGCGCTGCA GCAACTGCTG 
CTGCGCGGCC TGGAGCGGCA CCAGCTTTTC TTCTCGGCCG CGCTGCCCAA GCAGATTTCG 
CCGCCGCTGT TCAACCGCTA CGGCGGTGCG TCCAACAGCT TCGGCAACCA TGTGGACAGT 
GCCGTCCGTT TCCTGCGCGA CGGCTCGGGC CGGGTGCGCA CCGACATCTC GTGCACCCTG 
TTCCTGGCCG GGCCCGACGA ATACGACGGC GGCGAACTCG TGATCGAGGA CACCTTCGGC 
GTGCAGCGCG TCAAGCTGCC GGCCGGAGAC ATGGTGCTGT ATCCAGGCAC CAGTGTTCAC 
CGGGTGCTGC CGGTGACGCG GGGCTACCGC ACCGCGAGCT ATTTCTGGAT CCAGAGCATG 
GTGCGCAGCG ACGAGCAGCG CCGCCTGCTG TTCGAGATGG ACAACCACCT GCGCCATCTT 
CGCAGCCAAT ATGGCGAGAC CGATTCCGGC GTGATCGGCC TCACGAGCAC GTACCACAAC 
CTGCTGCGCA TGTGGCTCGA CGTCTGA
 
Protein sequence
MLLHIKQVLT SEELREARGI LADAPWGDGR ITAGSQSAHA KNNEQLREDC EETRALQQLL 
LRGLERHQLF FSAALPKQIS PPLFNRYGGA SNSFGNHVDS AVRFLRDGSG RVRTDISCTL 
FLAGPDEYDG GELVIEDTFG VQRVKLPAGD MVLYPGTSVH RVLPVTRGYR TASYFWIQSM 
VRSDEQRRLL FEMDNHLRHL RSQYGETDSG VIGLTSTYHN LLRMWLDV