Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1790 |
Symbol | |
ID | 7970806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1927227 |
End bp | 1929137 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644792390 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_002943706 |
Protein GI | 239814796 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGATT TCTTCCGCAA GTACAACAAG ATCGTCATGA TTTTCTTGTT CTTGCTGATC ATTCCCTCGT TCGTCCTCTT TGGCGTGGAG CGCTATCAGG GCTCCGGCGG CGAAGTGAAG GTTGCGCGGG TCGATGGCCA GAACATCACC CGGCCCGAGT GGGATGCGCA GCACCGTCTC GAGACCGACC GCATCCGCCA GCAATCGCCC AACGTCGATC CAACGCTGCT CGAATCCGAC GTGATGCGCT ATGCCACGCT GGAGCGCATG GTGCGCGACC GCGTGCTGGC CGCGGCAGCG GCCAAGTCGA ACGTGACCAT CTCCGAAGAG CGGCTGTCGC GCATCTTCGC GCAGGACACG GGCCTTGCGG CCTTCCGCAC GCCGGACGGC AAGTTCGACC GCGAGAGCTT CCAGCGCGTC ACCGGCCGCA CGCCGGAGCA GTACGAGGCG TCGATGCGCG CCGAGCTGGC CACGCAGCAG ATGCTGCTGG GCGTCACGGG CACGGCGTTC ACGCCGCCCG CGCTGGCGGC GGCAACCATC AACGCCTTCT ACGACCGGCG CGAGATCCAG GTCGCGCGCT TCAGCCCCGA GAGCTTCGCG TCCAAGGTGA CCGTGAGCGA TGCCGACGTG GAGGCCTACT ACAAGGCCCA CACCGCGCAG TTCCAGGCGC CCGAGCAGGC CAGCATCGAG TACCTGGTGC TCGACCTCGA AGCCGCCAAG AAGAACATCT CGGTGAACGA GGCCGACCTC AAGACCTACT ACGAGCAGAA CACGGCGCGC TTCGGCACCA AGGAAGAGCG CCGCGCAAGC CACATCCTGA TCACCGCGCC GGCCAGCGCA CCGGCAGCCG ACCGCGCCAA GGCCAAGGCC AAGGCGGAGC AATTGCTTGC CGAAGTGAAG AAGGCGCCCG CCACCTTCGC CGACGTCGCG CGCAAGAATT CGCAGGATCC CGGATCGGCG GAGAAGGGCG GCGACCTCGA CTTCGTGACG CGCGGTGCAA TGGTCAAGCC TTTCGAGGAT GCGCTGTTCG CACTCAAGAA GGGCGACATC AGCGACGTGG TCGAAACCGA GTTCGGCTAT CACATCATTC GCCTCGCCGA CATCAAGCCG GCCGTGGTGC CGCCGTTCGA GCAGGTGCGC GCCACCATCG AGAACGAAGT CCGTTCGCAG CAGGCGACGC AGGAATTCGC GAAGGCCGCC GAAACCTTCA CCGATGCGGT CTACCAGCAG CCCGACAGCC TCAAGCCCGC GGCGGAAAAG CTGAGGCTCA CGATCCAGAC GGCCAGCAAC GTCTCGCGCA CGCCGCCGCC GGGCGCCGCC GGCGTGCTCG CGAACCGCAA TTTCCTGAAC GCGCTGTTCG CGGCCGATTC GCTGGACCGC AAGCAGAACA CCGAAGCCAT CGAAGTCGGC TCCAACCAGC TCGCGGCAGG CCGTGTGACG CAGTACACGC CCGCGCATCC GATGCCGCTG GCCGAGGTCA AGGACAAGAT CCGTGCGCAG CTCATCACCG AGCGCGCCGC GGTCATGGCC AAGGCCGAGG GCGAAGCCAA GCTCGCCGCC TGGACCGCCA AGGCCGACGG CGCCACCTTC GGCGCACCGG TCACGGTGTC GCGCCGCGAA GCGCAGGCCC AGCCCCTTGC CGTCATCGAT GCCGCATTGC GCGCCGATGC GTCCAAGCTG CCCGCGCTGG TGGGCGTGGA CCTGGGCACG CAAGGCTACG CAGTGGTCCG CGTGACCAAG GTGGTTCCGC GCACGCCGTC GGCGCCCGAA CAAACGCAGC AGGAGAACGC GCAGGTCGGC CAGTCGGTGG CTGCGGCGGA AGAAGTTGCG TACTACAACT TGCTGAAGGA ACGCTTCAAG GCAGAGATCC TCGTGCCGAA GCCGGCGGAG ACGCTGCCGA TGGCCCGCTG A
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Protein sequence | MFDFFRKYNK IVMIFLFLLI IPSFVLFGVE RYQGSGGEVK VARVDGQNIT RPEWDAQHRL ETDRIRQQSP NVDPTLLESD VMRYATLERM VRDRVLAAAA AKSNVTISEE RLSRIFAQDT GLAAFRTPDG KFDRESFQRV TGRTPEQYEA SMRAELATQQ MLLGVTGTAF TPPALAAATI NAFYDRREIQ VARFSPESFA SKVTVSDADV EAYYKAHTAQ FQAPEQASIE YLVLDLEAAK KNISVNEADL KTYYEQNTAR FGTKEERRAS HILITAPASA PAADRAKAKA KAEQLLAEVK KAPATFADVA RKNSQDPGSA EKGGDLDFVT RGAMVKPFED ALFALKKGDI SDVVETEFGY HIIRLADIKP AVVPPFEQVR ATIENEVRSQ QATQEFAKAA ETFTDAVYQQ PDSLKPAAEK LRLTIQTASN VSRTPPPGAA GVLANRNFLN ALFAADSLDR KQNTEAIEVG SNQLAAGRVT QYTPAHPMPL AEVKDKIRAQ LITERAAVMA KAEGEAKLAA WTAKADGATF GAPVTVSRRE AQAQPLAVID AALRADASKL PALVGVDLGT QGYAVVRVTK VVPRTPSAPE QTQQENAQVG QSVAAAEEVA YYNLLKERFK AEILVPKPAE TLPMAR
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