Gene Vapar_1783 details

Gene Information

• Locus tag: Vapar_1783
• Symbol: uvrC
• ID: 7974525
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1920044
• End bp: 1922005
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644792382
• Product: excinuclease ABC subunit C
• Protein accession: YP_002943699
• Protein GI: 239814789
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGACG TGCATTCCGA TCAGTTGCTC AGCGAAGTCG CGGCCCTGCC GCAGCTGCCG 
GGCGTCTACC GCTATTTCGA CGCGGCCGGC GCGGTGCTCT ACGTGGGCAA GGCGCGCAAC 
CTCAAGAAGC GGGTTGCCAA CTATTTCCAG AAGAGCCATG GCGGCACGCG CATCGGCCAC 
ATGATCAGCA AGATCGTGCG CATGGAGACC ACCGTGGTGC GCTCCGAGGC CGAGGCGCTG 
CTGCTCGAGA ACAATCTCAT CAAGACGCTC AAGCCGCGCT ACAACATCCT GTTCCGCGAC 
GACAAGAGCT ACCCCTACCT GAAGATCGCC TCGCACGAGT TTCCGCGCCT GGCCTACTAC 
CGCGGCGCGG TCGACAAGAA GCACCGCTAC TTCGGGCCCT ACCCGAGCGC CTGGGCGGTG 
AAGGAGTCGA TCCAGCTGCT GCAGAAGGTG TTCAGGCTGC GCACCTGCGA AGACACGGTG 
TACGCCAACC GCACACGGCC CTGCCTGCTG TACCAGATCA AGCGCTGCAC CGGCCCCTGC 
GTGGGCTACA TCACGCCCGA GGCCTATGCG CAGGACGTGG CCAGCGCCGA GGCCTTCCTG 
AGGGGCGACA CCCAGCTCGT GCTCTCCAAG CTCGAGGCGC GCATGACCGA GCACGCCGAG 
AAGCTCGAAT TCGAACAGGC GGCCGAGCTG CGCAACCAGA TGTCGGCGAT CTCGCGCGTG 
CTGCACCAGC AGTCGATCGA GATCGCTTCG GACAAGGACG TCGACATCCT TGCCGTCAAG 
GTGCAGGGCG GCAAGGCCTG CGTCAACCTG GCGATGGTGC GCGGCGGCCG GCACCTGGGC 
GACCGCGCCT ATTTCCCGGT GCATGTGGAA GACGCCGCGC AGATCCACCA TGGCGAGCTC 
GATGCGGAAG AGGGCGCAGC GCCCGCCGCG GCCGATCCGA TCGAGGTGCA GGTGCTCGAG 
GCCTTCATTG CCCAGCACTA CATCGACGTG CCCGTGCCCG CCACGCTGGT GCTGAGCCAC 
CTGGTGAGCC GCGAGCTGAT CGAGGCGATC TCGCAGCAGG CCGGCGCGCG CGTGACGGCG 
GTGTTCCAGC CGCGCGAGCA GCGCCGCCAC TGGCTCGAGA TGGCCGAGAC CAACGCCGGC 
CTGCAACTGG CCCGGCTGCT GGCGGAAGAA GGTTCGCAGC AGGCGCGCAC CCGTGCGCTG 
GCCGATGCGC TGGAGCTCGC GCCCGACGAT CTCGACAACT TCCGCATCGA ATGCTTCGAC 
ATCTCGCACA CCGCGGGCGA GGCCACGCAG GCCTCGTGCG TGGTGTTCGA GCACCACACG 
ATGCAGAACC GCGAATACCG CCGCTACAAC ATCGAGGGCA TCACGCCCGG CGACGACTAC 
GCCGCGATGC GCCAGGTGCT GCACCGCCGC TATGGCAAGC TGGCCGAGGC CATGGCGGCC 
GAGACTGAAG CGCTGCCGCC GGGCGACGCC GAGAGCGATG GCGGCGGTGC GCCGCCCAAG 
ACCCGGACCG CGCGCATGCC GGAACTGGTG CTGGTCGACG GAGGCAAGGG CCAGGTGTCG 
ATGGCGCGCG AGGTGTTCAG CGAACTGGGC CTGCCGCTGT CGCTCATCGT CGGCGTCGAA 
AAGGGCGAGG GGCGCAAGGT CGGGCTCGAG GAACTGGTGT TTGCCGATGG CCGCGAGAAG 
GTCTACCTGG GCAAGGACTC CGCGGCGCTG ATGCTGGTGG CGCAGATCCG CGACGAGGCA 
CACCGCTTTG CCATCACCGG CATGCGCGCC AAGCGTGCGA AGGTGCGCGT GGGCGGCAGC 
CAGCTCGAGG ACATTCCGGG CATCGGACCG AAGCGCCGGG CGCGCCTGCT GCAGCGCTTT 
GGCGGAATCC GCGGCGTGGC GGCCGCCAGC GTCGAGGACA TTGCATCGGT CGAAGGCATT 
GCTACCGACC TGGCCGAGGA AATCTATCGC GCGCTGCATT GA 

 

Protein sequence

MSDVHSDQLL SEVAALPQLP GVYRYFDAAG AVLYVGKARN LKKRVANYFQ KSHGGTRIGH 
MISKIVRMET TVVRSEAEAL LLENNLIKTL KPRYNILFRD DKSYPYLKIA SHEFPRLAYY 
RGAVDKKHRY FGPYPSAWAV KESIQLLQKV FRLRTCEDTV YANRTRPCLL YQIKRCTGPC 
VGYITPEAYA QDVASAEAFL RGDTQLVLSK LEARMTEHAE KLEFEQAAEL RNQMSAISRV 
LHQQSIEIAS DKDVDILAVK VQGGKACVNL AMVRGGRHLG DRAYFPVHVE DAAQIHHGEL 
DAEEGAAPAA ADPIEVQVLE AFIAQHYIDV PVPATLVLSH LVSRELIEAI SQQAGARVTA 
VFQPREQRRH WLEMAETNAG LQLARLLAEE GSQQARTRAL ADALELAPDD LDNFRIECFD 
ISHTAGEATQ ASCVVFEHHT MQNREYRRYN IEGITPGDDY AAMRQVLHRR YGKLAEAMAA 
ETEALPPGDA ESDGGGAPPK TRTARMPELV LVDGGKGQVS MAREVFSELG LPLSLIVGVE 
KGEGRKVGLE ELVFADGREK VYLGKDSAAL MLVAQIRDEA HRFAITGMRA KRAKVRVGGS 
QLEDIPGIGP KRRARLLQRF GGIRGVAAAS VEDIASVEGI ATDLAEEIYR ALH