| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1780 |
|---|
| Symbol | |
|---|
| ID | 7974522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1915168 |
|---|
| End bp | 1916331 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644792379 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943696 |
|---|
| Protein GI | 239814786 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCA GCATACCAAG CAGGCACCAC GGCCTCGCCC CGCCGAAGAC AGGCACACTC
GCGCCCATGC AATGGGACAT TTTCTGCAGG GTCATCGACA ACCACGGCGA CCTCGGCGTG
TGCTGGCGGC TGTCGAGCCA GCTGGCCGCC CTCGGCGAAC GCGTGCGCCT GTGGATCGAC
GACGCCACGG CGCTGCACTG GATGGCGCCC ACCGGCTGCG AGGGCGTGAG CGTGGTCGAC
TGGCTCCAGC CCGCCGCCGT CCGGCAAGCC GTGGCGGCCC CGCCGCCCGA TGTGCTGGTC
GAGGCCTTCG GCTGCGAGCC GGCGCCCGAA CTGATCGCGC GCTTTGCCGA GCCGCAGGCC
CCGGGGGGGC CGGGCCGGGC GTGGATCAAT CTCGAATACC TGTCGGCCGA GCCGTACGTC
GAACGCCTGC ACGGCCTGCC CTCGCCCGTG TTCAAGGGGC CCGGCACGGG ATTGACGAAG
CGCTTTTTCT ATCCGGGCTT CACACCCGCC ACGGGAGGGC TGCTGCGGGA GCCCGGCCTG
CTGGAGCGAC GGGCACGCTT CGACCGCGCG CAATGGCTGG CGGCGCAGCA AATTCCCTGG
CGCGATGGCG AACGCCTGGT GTCGCTGTTC TGCTACGAGC CGCCGTCGCT GGCCACCCTG
CTCGAGCAGC TGGCGGCCGG TTCGCAGCCC ACGCGGCTCC TGGTCACCTC GGGCCGGGCC
GCGCATGCGG TCAGGGCGTT CTTTGCCGAC AGGAAACAGC CGGATCACGG GGTCTCGGGG
CTCGGCGCGC TATCAATTTC ATACCTGCCG TATCTCACGC AAGCCGATTT CGATCATCTT
CTCTGGGCCT GCGACCTGAA TTTCGTGCGC GGCGAGGATT CGCTCGTTCG GGGGCTGTGG
GCCGGCGCGC CGCTGGTCTG GCAGATCTAC CCGCAGGACG ACGACGCGCA CCACGTCAAG
CTCGGCGCCT GGCTCGACTG GCTGGGCGCC CCGCCGTCGC TGCGGCAGTT CCACCATGCC
TGGAACGGGT TCGACAGCAG CCCCCTGCCC GCTCTCGAAA CACAGGGCCC ATGGCGTGAA
ACCGTGCTGG CCGCCCGCCA AAAGCTGTGC GCACAAGAGG ACTTGGTCAC TCAATTGCGG
CATCTGGTCG CCGGAAAAAG CTAA
|
|---|
| Protein sequence | MPASIPSRHH GLAPPKTGTL APMQWDIFCR VIDNHGDLGV CWRLSSQLAA LGERVRLWID
DATALHWMAP TGCEGVSVVD WLQPAAVRQA VAAPPPDVLV EAFGCEPAPE LIARFAEPQA
PGGPGRAWIN LEYLSAEPYV ERLHGLPSPV FKGPGTGLTK RFFYPGFTPA TGGLLREPGL
LERRARFDRA QWLAAQQIPW RDGERLVSLF CYEPPSLATL LEQLAAGSQP TRLLVTSGRA
AHAVRAFFAD RKQPDHGVSG LGALSISYLP YLTQADFDHL LWACDLNFVR GEDSLVRGLW
AGAPLVWQIY PQDDDAHHVK LGAWLDWLGA PPSLRQFHHA WNGFDSSPLP ALETQGPWRE
TVLAARQKLC AQEDLVTQLR HLVAGKS
|
|---|
| |