| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1763 |
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| Symbol | |
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| ID | 7974505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1899503 |
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| End bp | 1901482 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792362 |
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| Product | DNA primase |
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| Protein accession | YP_002943679 |
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| Protein GI | 239814769 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.586276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCC CCGCTTCATT CATCCAGGAA CTCATCGCGC GCGCCGACGT GGTGGAAATC
GTCGGGCGCT ACGTGCAGCT CAAGAAGGCC GGCGCCAACT TCATGGGCCT GTGCCCGTTC
CACGGCGAGA AGTCGCCCTC CTTCTCGGTC AGCCCCACCA AGCAGTTCTA TCACTGCTTC
GGCTGCGGGG TCCACGGCAA CGCCATCGGC TTTCTCATGG AACACGCGGG CATGGGCTTC
GTCGAGGCGG TGCACGACCT TGCCGGCCAA TACGGCCTGC AGGTGCCCGA GGACGATGCC
TCTCCGGCCG AACGCGCCCG CGCCGCCAGC CAGCGCCAGA AGCAGGCCAC GCTGACCGAC
GTGCTCGAAA AAGCCGGCGA GGCCTACCGC AAGGCCCTGC GGCAGGCACC GGGCGCCATC
GAATACTTGA AGGGCCGCGG CGTCTCGGGC GAAGTGGCCA GGCAGTTCGG CATCGGCTAT
GCGCCCGCCG GCTGGCGCAC GCTTGCCAGC GTGTTTCCCG ACTACGACGA CCCGCTGCTG
GCCGAAAGCG GCCTGGTGAT CGTCAACGCC GAAGACGGCG CCGAAGACGC CAAGCGCTAC
GACCGCTTCC GCGACCGCGT GATGTTCCCG ATCCGCAACG TGAAGGGCGA ATGCATCGGC
TTCGGCGGCC GGGTGCTCGG CGACGAAAAG CCCAAGTACC TCAATTCGCC CGAGACGCCC
GTGTTCAGCA AGGGGCGCGA GCTCTACGGC CTGTACGAGG CCCGCGCCGC CTTCCGCGAG
CGCGGCTTCG CGCTGGTGAC CGAGGGCTAC ATGGACGTGG TCGCGCTGGC ACAGCTCGGC
TTTCCCAATG CCGTGGCCAC GCTTGGCACG GCCTGCACCA CGGAGCACGT GCAAAAACTC
TTCCGATTCA CCGAATCGGT GGTGTTCAGC TTCGACGGCG ACGCCGCCGG CCGCCGCGCC
GCGCGCAAGG CGCTCGACGG CGCCCTGCCC TATGCCACCG ACGTGCGCAG CATCAAGTTC
CTGTTCCTGC CGGCCGAGCA CGACCCCGAC AGCTTCATCC GCGAGTTCGG CGCCGATGCG
TTCGCGCGCT TCATCCAGGA AGCCACGCCG CTGTCGCGCT TCATGCTCGA GGCCGCGCGC
GAAGGCTGCG ACCTGACCAC CGCGGAAGGC CGCGCCCACA TGACGAGCAA TGTGCGCCCG
CTCTGGAGCG CCATGCCCGA CGGGGCGCTC AAGCGCCAGC TGCTGAGCGA GATCGCCGCG
CTGGTGCAGC TCGACGCGGC GGCGCTCTCC GAACTCTGGG CCTCCACGCC GGGCCCGCGC
AGGCCGGCTG CGGCGCCAGC CCAGCGCCAG GGCGACGCGG GCCACGAGAG CGACTACCCC
GATATGCCCC CGCCGGCCGA ATACGAGCCG CCGCGCTATG AAAGCGATAG CAAGCCGCGC
AAATTCACCA AGGGCAAGCG CTGGGGCGGC AAATTCGAGG CGCCGATCGA GCCGCTGCGC
GGCCGGGGCA AGCCGCCGAG CCGGCCGGAC GTGGCGGCGC GGCTGCTGCT GTCGAACATG
GCGCAGTGGG ACGCGCTGTC GCACGAGCTC CACGTGATGC TGTGCGACCT GCCGGGCCCG
CACGGGGCGC TTTTCACCTG GCTCGACAGC CAGCTGCACG AGCACGGCGT GCAGCCGTGG
GCGGCGCTCC GCGAAGGCAT GCGCGGGCTC GATTTCGAGG CGCTGGCCGA GCGCCTCATG
AGCGTTTCCG AGAGCGCCCC GGTCCCCGAG GGCGAGGAAG AGCAGCACCT GGCCGATGCC
GCCAAGGAGC TCGCGAGCGT GCTCGACTTC ATGCTCGACG ACCGGCTCAA GGCCCAGCAG
AGCGAGGCCA TTGCCGCGGT CGGAAAGGAC CCGAAGGCGC TCGAACGCTA CAAGGCGCTG
GAGGCCAGGC GGCTCGAATT GCGCAACCGA TTGAACCCGC GCGGTGCAGA AACTGCTTGA
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| Protein sequence | MTIPASFIQE LIARADVVEI VGRYVQLKKA GANFMGLCPF HGEKSPSFSV SPTKQFYHCF
GCGVHGNAIG FLMEHAGMGF VEAVHDLAGQ YGLQVPEDDA SPAERARAAS QRQKQATLTD
VLEKAGEAYR KALRQAPGAI EYLKGRGVSG EVARQFGIGY APAGWRTLAS VFPDYDDPLL
AESGLVIVNA EDGAEDAKRY DRFRDRVMFP IRNVKGECIG FGGRVLGDEK PKYLNSPETP
VFSKGRELYG LYEARAAFRE RGFALVTEGY MDVVALAQLG FPNAVATLGT ACTTEHVQKL
FRFTESVVFS FDGDAAGRRA ARKALDGALP YATDVRSIKF LFLPAEHDPD SFIREFGADA
FARFIQEATP LSRFMLEAAR EGCDLTTAEG RAHMTSNVRP LWSAMPDGAL KRQLLSEIAA
LVQLDAAALS ELWASTPGPR RPAAAPAQRQ GDAGHESDYP DMPPPAEYEP PRYESDSKPR
KFTKGKRWGG KFEAPIEPLR GRGKPPSRPD VAARLLLSNM AQWDALSHEL HVMLCDLPGP
HGALFTWLDS QLHEHGVQPW AALREGMRGL DFEALAERLM SVSESAPVPE GEEEQHLADA
AKELASVLDF MLDDRLKAQQ SEAIAAVGKD PKALERYKAL EARRLELRNR LNPRGAETA
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