| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1760 |
|---|
| Symbol | |
|---|
| ID | 7974502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1894373 |
|---|
| End bp | 1895503 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644792359 |
|---|
| Product | CBS domain containing membrane protein |
|---|
| Protein accession | YP_002943676 |
|---|
| Protein GI | 239814766 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3448] CBS-domain-containing membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.621716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACCT CCCCGTTCCT GACCTACGCG CGCGCCTGGT TGCCGGGCCG CACCACCGTC
GACATGCGCG AGAGGCTGCG CGCGGTCTGC GGGGCCGCCA TCGGCCTGCT CGTCACGGCC
GTGCTGTGCC GCTGGCTGGC CGAGCCGCTG GGCAGCAGCG TCTGGCTGAT CGCGCCGCTG
GGGGCCAGCG CCGTGCTGGT GTTCGCGGTG CCCGCGAGTC CGCTGGCGCA GCCCTGGTCG
GTGATCGGCG GCAACACGCT GTCGGCGATG GTCGGCATCG CCAGCGTGAG CTGGATCCCC
GACCCGGCGC TGAGCGCCGC GGTGGCGGTG GCCGCCGCCA TCGGCGTGAT GTTCTTCGCA
CGCTGCCTGC ATCCGCCGGG CGGCGCGGCG GCGCTGCTCG CGGTGCTCAC GCACACCACG
CACTTCTCGT CCGCCCTCTT TCCGTTCTTC ACCAATTCGC TGCTGCTGGT GCTGGCGGGC
GTGGCCTACA ACTCGCTCAC GGGCAGGCGC TATCCGCATG TGCAGGTCGC GCAGCCGCCG
CGCACCGATG CGCGCTTCAG CCAGGCCGAC ATCGATGCGG TGCTGGCGCG CTACAACCAG
GTGCTGGACA TCAGCCGCGA CGACCTCGAA TCGCTGATCC AGCAGACCGA GCTCGAGTCG
TACAAGCGCC GGCTCGGCAC CCTGCACTGC GGCGACATCA TGTCGCGCGA CCCGGTGTCG
GTGGAGTTCG GCACGCCGCT GCAGGAGGCC TGGATGCTGA TGAACCAGCG CCGCATCAAG
GCGCTGCCGG TCACCGACCG CACGCGCCGC GTGGTCGGCA TCGTGACGCA GGCCGACTTC
TTCCGCCAGC TCGACCTGGA GCACCACGAA GGCATTGCCG GCCGCCTGCG CGACCTGATC
CGCGCCACGC GCACCGTGGT GTCGAACAAG CCGGAGGTGG TGGGCCAGAT CATGACGCGC
CAGGTGCGCG TGGCCAGCGC GGACCGCCCG GTGGTCGACC TGGTGCCGCT GTTCTCCGAG
GGCGGCCACC ACCATATCCC CATCATCGAC CATGAAAAGC GGCTCACCGG CATGATCACG
CAGTCGGATT TCGTGCGCGC CCTCTACCGT GCCGTGCGGC CGGAGAACTG A
|
|---|
| Protein sequence | MRTSPFLTYA RAWLPGRTTV DMRERLRAVC GAAIGLLVTA VLCRWLAEPL GSSVWLIAPL
GASAVLVFAV PASPLAQPWS VIGGNTLSAM VGIASVSWIP DPALSAAVAV AAAIGVMFFA
RCLHPPGGAA ALLAVLTHTT HFSSALFPFF TNSLLLVLAG VAYNSLTGRR YPHVQVAQPP
RTDARFSQAD IDAVLARYNQ VLDISRDDLE SLIQQTELES YKRRLGTLHC GDIMSRDPVS
VEFGTPLQEA WMLMNQRRIK ALPVTDRTRR VVGIVTQADF FRQLDLEHHE GIAGRLRDLI
RATRTVVSNK PEVVGQIMTR QVRVASADRP VVDLVPLFSE GGHHHIPIID HEKRLTGMIT
QSDFVRALYR AVRPEN
|
|---|
| |