| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1741 |
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| Symbol | |
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| ID | 7974483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1875366 |
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| End bp | 1876376 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792340 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002943657 |
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| Protein GI | 239814747 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGA AACCCCTCAT TGCCGCGGCC GCCGTGGCGC TGGCCGCCGC GGCCGGCGGC
TGGTGGTACT TCAGCCGCTC GGCCACGCCC TCCGACCAGC TCGTGCTGTA CGGCAACGTC
GACGTGCGCC AGGTCTCGCT CGCCTTCAAT GCCAACGAGC GCGTGGCGGA GCTCACGGTG
CGCGAAGGCG ACCACGTGCG GGCCGGGCAG GTGCTGGGGC GGCTCGACAC GCGCTCGCTG
GTGCTGCGCG TGGCGCAGGC GCAGGCGCGC ATCGGCGTGC AGGAGCAGGC GCTGCTGCGC
CTGAAGACCG GCAGCCGCCC CGAGGAACTG GCGCAGGCCG GCGCCCAGGT GGCCGCGGCG
CAAGCCGATG CCGACCTGGC GCAGCAGCAG CTGGCGCGCC TGCAGGCCAT CGGCCAGACC
ACCGCCGGCC GCGCCGTGAG CCAGCAGGAC CTCGACAGCG CGCAGGCCCG CCGCAAGGTG
GCGCTCGCGC AGCTGGACAA CGTGCGCAAG GCGCAGCAGC TCGCGGTGGC CGGCCCGCGC
AAGGAAGACA TCGCGCAGGC GCAGGCCCAG CTTGAATCCG CGCGCGCCGA TCTCGCGCTC
ATGAACCACC AGCTGGCCGA GGCCGAGCTC AGGTCGCCCA TCGACGCCGT GGTGCGCGCC
CGCCTGCTCG AGCCCGGCGA CATGGCTTCG CCGCAGCGCC CGGCCTTCAC GCTGGCCATC
ACCGATCCCA AGTGGATTCG CGCCTATGTG GCCGAGCCCG ACCTCGGCCG CGTGCGGCCC
GGCCAGCCGG CCAGTGTGGC CACCGACAGC CAGCCCGGCC AGCCGATCGC GGGCAAGGTG
GGCTACATCT CGTCGGTGGC CGAGTTCACG CCCAAGACGG TGCAGACCGA GGAGCTGCGC
AGCAGCCTGG TCTACGAGAT CCGCGTGATG GTCGACGACA AGGAAGACCG GCTGCGGCTC
GGCATGCCAG CCACGGTGCG GCTGCAGCTG TCGTCGACCG GCAAGCCGTG A
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| Protein sequence | MNKKPLIAAA AVALAAAAGG WWYFSRSATP SDQLVLYGNV DVRQVSLAFN ANERVAELTV
REGDHVRAGQ VLGRLDTRSL VLRVAQAQAR IGVQEQALLR LKTGSRPEEL AQAGAQVAAA
QADADLAQQQ LARLQAIGQT TAGRAVSQQD LDSAQARRKV ALAQLDNVRK AQQLAVAGPR
KEDIAQAQAQ LESARADLAL MNHQLAEAEL RSPIDAVVRA RLLEPGDMAS PQRPAFTLAI
TDPKWIRAYV AEPDLGRVRP GQPASVATDS QPGQPIAGKV GYISSVAEFT PKTVQTEELR
SSLVYEIRVM VDDKEDRLRL GMPATVRLQL SSTGKP
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