| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1737 |
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| Symbol | |
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| ID | 7974479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1869650 |
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| End bp | 1871179 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792336 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002943653 |
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| Protein GI | 239814743 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCAT CGCGCACCCT CTTCTCCTGT TCCGCGCTCG CGCTCCTTCT TGCAGGCTGC
GCCGTGGGGC CCGACCACCG GCCCGCGCAG CCGCAGGCGC CGGCCGACTG GTCCGCATGG
CACGGCGGCT CGGCGGCGCT GCTCGGCGCC GAGCGCAAGG CCGCGCCCAC AGCCGCCGCA
TCCGGCGACT GGAAGGCCTT CGGCGATCCG CTGCTCGACC AGTTGCAAGC CCGCGCCCTG
GCCGCCAACC ACGACCTGCA GACCGCGGCC CTGCACTTCG CGCAAAGCCG CGTCCAGCGC
ACCGCGGCCG CGGCGCAGCA GGCGCCACAG CTCAATGCCA GCGCCAGCGT GAACCGGCAG
CGCCAGAGCG AGAGCGGCGC CGCCACGCGG ATGATCGATG CGCTGGGCTC GTCGGTCGCC
AACCGCGACC AGCTGATCCG CACGCTCAGC GAGCCCTACA ACCTTTACCA GGCCGGCTTC
GACGCCTCCT GGGAAATCGA CCTCTGGGGC CGCGTGCGGC GCAGCATCGA GGCCGCCGAT
GCGGATGCCG GCGCATCGGC CGCGCTGCTG CAGCAGGCGC AGCTCAGCGT GCAGGCCGAG
GTGGCGCGCA GCTACTTCGA ACTGCGCGGC GCGCAGCGCG AACTGCGCGT GGCGAACGCC
GACATCGCGG CCGCAGCCGA ATCGCTCGAG CTGGTGCAGG CGCGTGCCGA TGGCGGCCTG
GTCACCGACC TGGACCCGAC GCGCCAGCGC ACGCAGCTGG CCGAACTCAA GGCGCGCATC
CCCATGCTGC TGCAGCAGGA GGCGCAGGCC ATGAACCAGA TCACGCTGCT GACCGGCGCA
GCGCCGGGCG CGCTGAACGC CGAACTCGCG CCAGCTTCCG ATGGCGCGGG CAACCCGCTC
GAAGCGCTGC AGGCACCGCC GCTGCCCGAG CTTGCGCTGG GCCTGCCCGG CGACGTGGTG
CGCCGGCGCC CCGACATCGC CGCCGCCGAA GCCCAGCTGC ATGCCGCCAC CGCGCGCATC
GGCGTGGCGG TGGCCGACCT CTATCCGCGC GTCACGCTCG GTGCGGGCTT CGGCTACGAA
TCGGCCGGCA GCGAGCGTTT TGGCGAATGG GGCAGCCGCC AATGGCACGT CGGTCCTTCC
ATCAGCCTGC CGATCTTCGA CAACGACCGG CGCCGCAGCA CGGTGAACCT GCGCGAGCTG
CAGCAGCAGG AAGCCGCGGT GGCCTTCCAG CAGGCCGTGC TCAAGGCATG GCACGAGATC
GATTCGGCGC TCAGCGCCTA CGCCGCCGAG CGCCAGCGCC ATGCCGAGCT GGCCGAGCGC
GAGCGCAGCA GCCGCGATGC ACTCACGCTC GCACACGCGC GCTATGCGAA CGGACTCACG
GATTTCGGCG TCGAACTCGA CGCGCGCCGC GCACTGCTGC AGGCGCGGCG CGACCAGGTG
CAGAGCACGA GCCGCATGGC GGTGGGCATG GTGGCGGTCT ACAAGGCGCT GGGCGGCGGC
ATTCCCGCGG CGCCCGGCAC TCCAGGCTAG
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| Protein sequence | MSASRTLFSC SALALLLAGC AVGPDHRPAQ PQAPADWSAW HGGSAALLGA ERKAAPTAAA
SGDWKAFGDP LLDQLQARAL AANHDLQTAA LHFAQSRVQR TAAAAQQAPQ LNASASVNRQ
RQSESGAATR MIDALGSSVA NRDQLIRTLS EPYNLYQAGF DASWEIDLWG RVRRSIEAAD
ADAGASAALL QQAQLSVQAE VARSYFELRG AQRELRVANA DIAAAAESLE LVQARADGGL
VTDLDPTRQR TQLAELKARI PMLLQQEAQA MNQITLLTGA APGALNAELA PASDGAGNPL
EALQAPPLPE LALGLPGDVV RRRPDIAAAE AQLHAATARI GVAVADLYPR VTLGAGFGYE
SAGSERFGEW GSRQWHVGPS ISLPIFDNDR RRSTVNLREL QQQEAAVAFQ QAVLKAWHEI
DSALSAYAAE RQRHAELAER ERSSRDALTL AHARYANGLT DFGVELDARR ALLQARRDQV
QSTSRMAVGM VAVYKALGGG IPAAPGTPG
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