| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1731 |
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| Symbol | |
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| ID | 7974473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1861786 |
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| End bp | 1863141 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792330 |
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| Product | glucarate dehydratase |
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| Protein accession | YP_002943647 |
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| Protein GI | 239814737 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00228751 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACTTC CAGACTCCGC TTCTCCCATC TCCGGCGCAC CCGTGGTCAC CGCCATGCGC
GTGGTGCCCG TCGCGGGCCA CGACAGCATG CTCATGAACC TGAGCGGCGC GCACGGCCCG
TTCTTCACGC GCAACCTGCT GATCCTGACC GACAGCGCGG GCCACACCGG TGTCGGCGAA
GTGCCGGGCG GCGAGAAGAT CCGCCAGACG CTCGAAGATG CGCGCGGCCT CATCGTGGGC
CAGCCCCTGG GCAAACACCA CGCAGTGCTC AACAGCATGC GCAGTGCCTT CGCCAACCGC
GACAGCGGCG GCCGCGGCCA GCAGACCTTC GACCTGCGCG TGACCATCCA TGCGGTCACC
GCCGTCGAGG CGGCCTTGCT CGACCTGCTG GGCCAGCACC TCGAAGTGCC GGTGGCCGCA
CTGCTCGGCG AAGGCCAGCA GCGCGATGCC GTGCAGATGC TCGGCTACCT GTTCTACGTG
GGCGACCGCA CCAGGACCGA CCTGCCCTAC GAGAGCGACC CCGGCGGCGC CGACGACTGG
TTTCGCCTGC GCCACGAAGA AGCCATGACG CCCGAAGCCA TCGTGCGCCT GGCCGAGGCC
ACGCACGCGC GCTACGGCTT CACCGACTTC AAGCTCAAGG GCGGCGTGCT GCGCGGCGAG
GAAGAAGTCG AGGCCATCCG CGCGCTGCAC GAGCGCTTTC CCAAGGCGCG CGTCACGCTC
GACCCCAACG GCGGCTGGCT GTTGGCCGAT GCGATCCGCC TGTGCCGCGA CCTGCATGGC
GTCATGGCCT ATGCCGAGGA CCCCTGCGGC GCCGAAGGCG TGTTCTCGGG CCGCGAGGTG
ATGGCCGAGT TCCGCCGCGC CACGGGCCTG CCGACCGCCA CCAACATGGT CGCCACCGAC
TGGCGCGAGA TGGTGCACAG CCTCTCGCTG CAGTCGGTCG ACATTCCGCT GGCCGATCCG
CACTTCTGGA CGATGCAGGG CTCGGTGCGC GTGGCGCAGC TGTGCCAGGC CTGGGGCCTG
ACCTGGGGCT CGCATTCGAA CAACCACTTC GATGTGTCGC TGGCCATGTT CACGCACGTG
GCCGCGGCCG CGCCGGGCAA GGTGACGGCC ATCGACACGC ACTGGATCTG GCAGGACGGC
CAGCGCCTGA CCAAGGCCCC GCTGCAGATC GAGGGCGGCT ACGTGAAGGT GCCCACGCGC
GGCGGCCTGG GCGTGGAGCT CGACATGGAC GAAGTCGAGA AGGCGCACCA GCTGTACCTG
AAGCATGGCC TGGGCGCGCG CAACGATGCG CAGGCGATGC AATACCTGAT CCCGGGGTGG
ACTTTCGACA ATAAAAAGCC CTGCATGGTG CGCTGA
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| Protein sequence | MTLPDSASPI SGAPVVTAMR VVPVAGHDSM LMNLSGAHGP FFTRNLLILT DSAGHTGVGE
VPGGEKIRQT LEDARGLIVG QPLGKHHAVL NSMRSAFANR DSGGRGQQTF DLRVTIHAVT
AVEAALLDLL GQHLEVPVAA LLGEGQQRDA VQMLGYLFYV GDRTRTDLPY ESDPGGADDW
FRLRHEEAMT PEAIVRLAEA THARYGFTDF KLKGGVLRGE EEVEAIRALH ERFPKARVTL
DPNGGWLLAD AIRLCRDLHG VMAYAEDPCG AEGVFSGREV MAEFRRATGL PTATNMVATD
WREMVHSLSL QSVDIPLADP HFWTMQGSVR VAQLCQAWGL TWGSHSNNHF DVSLAMFTHV
AAAAPGKVTA IDTHWIWQDG QRLTKAPLQI EGGYVKVPTR GGLGVELDMD EVEKAHQLYL
KHGLGARNDA QAMQYLIPGW TFDNKKPCMV R
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