Gene Vapar_1729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1729 
Symbol 
ID7974471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1860346 
End bp1861257 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content67% 
IMG OID644792328 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionYP_002943645 
Protein GI239814735 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.52381e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCCTC AAGAACTCAA ATCCATCATG GGCTCCGGCC TGCTCTCGTT CCCGTTGACC 
GACTTCGACG CGAACGGGGA CTTCAACAAG AAGGGCTACG AGAAGCGTCT CGAATGGCTC
GCTCCCTACG GCGCGAGCGC GCTGTTCGCG GCCGGCGGCA CCGGTGAGTT CTTCTCGCTG
ACCGGCGACG AATACCCCGG CATCATCCAG ACCGCGGTCG ACACCTGCCG CGGCGTGGTG
CCGATCATCG CGGGCGCCGG CGGCCCCACG CGCTTTGCGA TCCAGTGCGC GCAGGCGGCC
GAGAAGGCCG GCGCACACGG CATCCTGCTG CTGCCGCACT ACCTGACCGA AGCCGGCCAG
GAAGGCCTGG CCGCGCACGT GGAAGCCGTG TGCAAGAGCG TGAAGTTCGG CGTGATCGTC
TACAACCGCG CCACCAGCCG CCTCAAGCCC GAGACGCTGG CCGCGCTGGC CGAGCGCAAC
CCGAACCTCG TGGGCTTCAA GGACGGCGTG GGCGACATCG AAGCCATGGT CGCCATCTAC
CAGAAGATGG GCGACCGCTT CGCCTACCTG GGCGGCCTGC CCACGGCCGA GGTCTATGCC
GCGGCCTACA AGGCGCTGGG CACGCCGGTG TATTCGTCGG CCGTCTTCAA CTTCATCCCG
AAGACCGCGA TGGATTTCTA CAAGGCCGTT GCCGCCGACG ACCTGCCGAC GCAGCACCGC
CTGCTCAAGA ACTTCTTCAT GCCGTATCTC GATCTGCGCA ACCGCGTGCC CGGCTATGCG
GTGAGCATCG TCAAGGCCGG TGCCAAGATC GTCGGCCACG ACGCCGGCCC GGTGCGCACG
CCGCTCACGG ACCTCCAGCC CGCCGAGATG GAACAGCTCA AGGCGCTGAT CGACGCGCTC
GGCCCGCAGT AA
 
Protein sequence
MNPQELKSIM GSGLLSFPLT DFDANGDFNK KGYEKRLEWL APYGASALFA AGGTGEFFSL 
TGDEYPGIIQ TAVDTCRGVV PIIAGAGGPT RFAIQCAQAA EKAGAHGILL LPHYLTEAGQ
EGLAAHVEAV CKSVKFGVIV YNRATSRLKP ETLAALAERN PNLVGFKDGV GDIEAMVAIY
QKMGDRFAYL GGLPTAEVYA AAYKALGTPV YSSAVFNFIP KTAMDFYKAV AADDLPTQHR
LLKNFFMPYL DLRNRVPGYA VSIVKAGAKI VGHDAGPVRT PLTDLQPAEM EQLKALIDAL
GPQ