| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1729 |
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| Symbol | |
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| ID | 7974471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1860346 |
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| End bp | 1861257 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792328 |
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| Product | 5-dehydro-4-deoxyglucarate dehydratase |
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| Protein accession | YP_002943645 |
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| Protein GI | 239814735 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000952381 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCCTC AAGAACTCAA ATCCATCATG GGCTCCGGCC TGCTCTCGTT CCCGTTGACC
GACTTCGACG CGAACGGGGA CTTCAACAAG AAGGGCTACG AGAAGCGTCT CGAATGGCTC
GCTCCCTACG GCGCGAGCGC GCTGTTCGCG GCCGGCGGCA CCGGTGAGTT CTTCTCGCTG
ACCGGCGACG AATACCCCGG CATCATCCAG ACCGCGGTCG ACACCTGCCG CGGCGTGGTG
CCGATCATCG CGGGCGCCGG CGGCCCCACG CGCTTTGCGA TCCAGTGCGC GCAGGCGGCC
GAGAAGGCCG GCGCACACGG CATCCTGCTG CTGCCGCACT ACCTGACCGA AGCCGGCCAG
GAAGGCCTGG CCGCGCACGT GGAAGCCGTG TGCAAGAGCG TGAAGTTCGG CGTGATCGTC
TACAACCGCG CCACCAGCCG CCTCAAGCCC GAGACGCTGG CCGCGCTGGC CGAGCGCAAC
CCGAACCTCG TGGGCTTCAA GGACGGCGTG GGCGACATCG AAGCCATGGT CGCCATCTAC
CAGAAGATGG GCGACCGCTT CGCCTACCTG GGCGGCCTGC CCACGGCCGA GGTCTATGCC
GCGGCCTACA AGGCGCTGGG CACGCCGGTG TATTCGTCGG CCGTCTTCAA CTTCATCCCG
AAGACCGCGA TGGATTTCTA CAAGGCCGTT GCCGCCGACG ACCTGCCGAC GCAGCACCGC
CTGCTCAAGA ACTTCTTCAT GCCGTATCTC GATCTGCGCA ACCGCGTGCC CGGCTATGCG
GTGAGCATCG TCAAGGCCGG TGCCAAGATC GTCGGCCACG ACGCCGGCCC GGTGCGCACG
CCGCTCACGG ACCTCCAGCC CGCCGAGATG GAACAGCTCA AGGCGCTGAT CGACGCGCTC
GGCCCGCAGT AA
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| Protein sequence | MNPQELKSIM GSGLLSFPLT DFDANGDFNK KGYEKRLEWL APYGASALFA AGGTGEFFSL
TGDEYPGIIQ TAVDTCRGVV PIIAGAGGPT RFAIQCAQAA EKAGAHGILL LPHYLTEAGQ
EGLAAHVEAV CKSVKFGVIV YNRATSRLKP ETLAALAERN PNLVGFKDGV GDIEAMVAIY
QKMGDRFAYL GGLPTAEVYA AAYKALGTPV YSSAVFNFIP KTAMDFYKAV AADDLPTQHR
LLKNFFMPYL DLRNRVPGYA VSIVKAGAKI VGHDAGPVRT PLTDLQPAEM EQLKALIDAL
GPQ
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