Gene Vapar_1727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1727 
Symbol 
ID7974469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1858424 
End bp1859245 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content71% 
IMG OID644792326 
ProductGntR domain protein 
Protein accessionYP_002943643 
Protein GI239814733 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.57079e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCCAGA CGACTGCGGG TAATCCCTCA ATTTCCGACG CGGCGACAGA AGTTGCCGCC 
GGCACGCCCT TCGTGGGGCG GCCGCGTCCG CGCGCACGCG GGCTCGCCCA CGGGCTGGTC
GAGGACCTGG GCGAAAAGAT CCGCAGCCAG CAGCTGCGCC CGGGCGACAA GCTGCCGACC
GAGTCAGCCA TCATGCAATC CTTCGGCGTC AGCCGCACCG TGGTGCGCGA GGCGCTGTCC
AAGCTGCAGG CCGCGGGGCT GGTGGAAACG CACCACGGCG TGGGCACCTT CGTGCTGCAG
CCGCGCGCGG CCGGCATGTT CCGGCTCGAT TCCGCCGACA TCGCCACCTC GGTGGACGTG
CTGGCGGTGC TCGAGCTGCG CATCAGCCTC GAGACCGAAT CCGCCGGGCT GGCCGCCACG
CGCCGCACCG AGGAGCAGCT GCTCGCGATG CGCCAGGCGC TCGACGATTT CGAGCGCAAC
GTGGCGGTGG CGGGGGACAC CGTGGCGCCC GATTTCCGCT TCCACCTGCA GATCGCCCAG
GCTACCGGCA ACCCGTACTT CGCGGACATC ATGAGCCACC TGGGCACCAC GATCATCCCG
CGCACGCGCA TCACCGCCAT CCGCAACTAC GACCGGCGCG GCGAGTACCT GAGCCGCGTG
AACCGCGAGC ACGAAGAGAT CTACGCGGCC ATCGCGCGCC GCGATCCCGA ATCGGCCCGC
GCGGCCATGC GCATCCACCT GACCAACAGC CGCGAGCGGC TGCGCGTGGC GCAGGAAGCG
GCCCAGCAGG CCGCGGCCAA GACGCCGCCA GCGGCTCCCT GA
 
Protein sequence
MVQTTAGNPS ISDAATEVAA GTPFVGRPRP RARGLAHGLV EDLGEKIRSQ QLRPGDKLPT 
ESAIMQSFGV SRTVVREALS KLQAAGLVET HHGVGTFVLQ PRAAGMFRLD SADIATSVDV
LAVLELRISL ETESAGLAAT RRTEEQLLAM RQALDDFERN VAVAGDTVAP DFRFHLQIAQ
ATGNPYFADI MSHLGTTIIP RTRITAIRNY DRRGEYLSRV NREHEEIYAA IARRDPESAR
AAMRIHLTNS RERLRVAQEA AQQAAAKTPP AAP