| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1725 |
|---|
| Symbol | |
|---|
| ID | 7974467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1856649 |
|---|
| End bp | 1857539 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792324 |
|---|
| Product | SMP-30/Gluconolaconase/LRE domain protein |
|---|
| Protein accession | YP_002943641 |
|---|
| Protein GI | 239814731 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000166829 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCTG AGCTCGTCCT CGATGCGCGC AACGGCACCG GCGAAAGCCC GGTGTGGCAT
GCCGCGGAGC AGGCACTCTA CTGGGTCGAC ATTCCGGCGC GCACGCTGAA CCGCTGGCAT
GCGAGCGAAG GCCATGCGCA GTGGCATGCG GACGAAATGA TCGCCTGCAT CGCGCCGCGC
GCCGATGCGC CCGGCGCCTG GATCGCCGGC ATGGAAAGCG GCCTCTTCTC GCTCGCGCCG
CAGGCCGGCG GCACGCTGGC CGCCACCGCG CTCGCACCCG TGGCGCATGC CGTGCCCGCG
ATGCGCTTCA ACGACGGCCG CTGCGACCGC CAGGGCCGCT TCTGGGCCGG CACGATGCTG
CAGGACATGG CCGCCGGCGC GCGCGTCGGC CGGCTCTACA GCTACGCCAA GGGCAGTGCC
GGCGCCGCCA TGCGGCTGGA CGACTTCATC GTGCCCAACG GGCTTGCCTT CAGTCCCGAC
GGCCGCACGA TGTACCTCTC GGATTCGCAT CCCGCGGTGC AGGCCATCTG GTCCTTCGAC
TACGACACCG ACACCGGCAC GCCGCACAAC CGCCGCCTGT TCGCCGACAT GAAGCCGCTG
CCCGGCCGCC CCGACGGCGC GGCCATGGAC GCCGACGGCT GCTACTGGAT CTGCGGCAAC
GACGCGGGCC TGGTGCACCG CTTCACACCC CAGGGCCGGC TCGACCGCTC GCTCGAAGTG
CCGGTGAAGA AGCCCGCGAT GTGCGCCTTC GGCGGCCCGG CGCTCGACAC GCTCTTCGTC
ACCTCGATCC GGCCCGGCGG CGTCGACCTG TCGGACCAGC CCCTGGCCGG CGGCGTGTTC
GCGCTGCGGC CCGGCGTGGC GGGCGTTCCC GAGCCGGCGT TCGGCGGCTG A
|
|---|
| Protein sequence | MQAELVLDAR NGTGESPVWH AAEQALYWVD IPARTLNRWH ASEGHAQWHA DEMIACIAPR
ADAPGAWIAG MESGLFSLAP QAGGTLAATA LAPVAHAVPA MRFNDGRCDR QGRFWAGTML
QDMAAGARVG RLYSYAKGSA GAAMRLDDFI VPNGLAFSPD GRTMYLSDSH PAVQAIWSFD
YDTDTGTPHN RRLFADMKPL PGRPDGAAMD ADGCYWICGN DAGLVHRFTP QGRLDRSLEV
PVKKPAMCAF GGPALDTLFV TSIRPGGVDL SDQPLAGGVF ALRPGVAGVP EPAFGG
|
|---|
| |