| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1708 |
|---|
| Symbol | |
|---|
| ID | 7974450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1836535 |
|---|
| End bp | 1838082 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644792307 |
|---|
| Product | SpoVR family protein |
|---|
| Protein accession | YP_002943624 |
|---|
| Protein GI | 239814714 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2719] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0816979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCG ACCACCCTCC CCTCGCGCGC GGCACCGAAC GCCTGGAACG CCTGCCCAGT
CCGTCGGACT GGACCTTCGA TCTCATCGAG ACCTACCACA CCGAGATCGC GAAGACGGCC
AGGAGCTTCG GCCTGGACGT GTATCCCAAC CAGCTCGAGG TGATCACCGC CGAGCAGATG
ATGGATGCCT ATGCCAGCGT CGGCATGCCC ATGATCTATC GCCACTGGTC GTACGGCAAG
CAGTTCATCG CCACTGAAAA GAACTACCGC CGCGGCCACA TGGGGCTGGC CTACGAGATC
GTCATCAACT CGGACCCCTG CATTGCCTAC CTGATGGAAG AAAACACCAT GGCCATGCAG
GCCCTGGTGA TCGCGCATGC GGCCTATGGC CACAACAGCT TCTTCAAGGG CAACTACCTG
TTCCGGATGT GGACCGATGC GTCCTCGATC ATCGACTACC TCGTCTATGC GCGGCACTAC
ATCGCCGAAT GCGAGGAACG GCACGGCCTC GATGCGGTGG AGCAGCTGCT CGACTCCTGC
CACGCGCTGA TGAACTACGG CGTCGACCGC TACCGCCGCC CGCAGAAGCG CTCGCTGGCG
CAGGAAGGCA CGCAGCGTGC CGAACGCGAG CGCTACATGC AGCAGCAGGT CAACGACCTC
TGGCGCACGC TGCCGCGCAA GAGCGAACAC ACCACCGAAT CCGACTCGTC CCGCCGCTTC
CCCTCGGAGC CGCAGGAGAA CCTGCTCTAT TTCATCGAGA AGAACGCCGC GCTGCTCGAG
CCCTGGCAGC GCGAGGTGGT GCGCATCGTG CGCAAGATCG CGCAGTATTT CTATCCGCAG
CGCCAGACCC AGGTCATGAA CGAGGGCTGG GCCACGTTCT GGCACTACAC CCTGCTGAAC
ACCATGTACG ACCGCGGCCA GCTCGCCGAC GGCTTCATGA TGGAATGGCT CAGCTCGCAC
ACCGGCGTGA TCTTCCAGCC GCCCGTCGGG CATCGCGCCT ACAGCGGCAT CAACCCCTAT
GCACTGGGTT TCTCGATGTT CACCGAGCTG CGGCGCGTCT GCGAAAAGCC CACCGAGGAA
GACCGCCGCT GGTTCCCCGA CTTCGCGGGC ACCGACTGGG TCAAGACGCT CGACTACGCC
ATGCGCAACT TCAAGGACGA GAGCTTCGTC GGCCAGTTCC TGAGTCCCAA GACCATGCGC
GATTTCAGGC TGTTCGCGAT CCGCGACCAC CAGAGCGAAC CCGAGCTGGA GGTGTCCGCC
ATCCACGACG ACAGCGGCTA CCACGCGCTG CGCGAATCGC TGTCACGCCA GTACGACATC
GGCAGCAGGG AGCCCGACAT CCAGGTGTGG AACGTCAACA TGCGCGGCGA TCGCGCGCTG
ACGCTGCGCC ACACGCAGCG CAACAACCTG CCGCTGCACG ACGATGCCGA AGAGGTGCTC
AAGCACGTCG CGCGGCTCTG GGGCTTCGAC GTGCACCTGG AGAGCGTCGA TGCCCAGGGC
CACATCACCC GCAGCTGGAA GGCCGCGGCC CCGCGGCAAA CCGACTGA
|
|---|
| Protein sequence | MTSDHPPLAR GTERLERLPS PSDWTFDLIE TYHTEIAKTA RSFGLDVYPN QLEVITAEQM
MDAYASVGMP MIYRHWSYGK QFIATEKNYR RGHMGLAYEI VINSDPCIAY LMEENTMAMQ
ALVIAHAAYG HNSFFKGNYL FRMWTDASSI IDYLVYARHY IAECEERHGL DAVEQLLDSC
HALMNYGVDR YRRPQKRSLA QEGTQRAERE RYMQQQVNDL WRTLPRKSEH TTESDSSRRF
PSEPQENLLY FIEKNAALLE PWQREVVRIV RKIAQYFYPQ RQTQVMNEGW ATFWHYTLLN
TMYDRGQLAD GFMMEWLSSH TGVIFQPPVG HRAYSGINPY ALGFSMFTEL RRVCEKPTEE
DRRWFPDFAG TDWVKTLDYA MRNFKDESFV GQFLSPKTMR DFRLFAIRDH QSEPELEVSA
IHDDSGYHAL RESLSRQYDI GSREPDIQVW NVNMRGDRAL TLRHTQRNNL PLHDDAEEVL
KHVARLWGFD VHLESVDAQG HITRSWKAAA PRQTD
|
|---|
| |