| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1660 |
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| Symbol | ligD |
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| ID | 7974728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1793621 |
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| End bp | 1796164 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792259 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002943576 |
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| Protein GI | 239814666 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.600549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCGCG CAAACCCCCT GAAGCGCTAC AAGGAAAAGC GCAACTTCGG CGCCACCCCC
GAGCCCGCGG AGGGCGGCGC ATCGGCGCCC GGCGTGCTGC AGTTCGTGGT GCAGAAGCAC
TGGGCGACCC GGCTGCACTA CGACTTCCGC ATCGAGCTCG ATGGCGCCAT GAAGAGCTGG
GCCGTGCCCA AGGGCCCGAG CTACGACACG CACGACAAGC GCATGGCCGT GCATGTGGAG
GACCATCCCA TCGCCTACAA CCAGTTCGAG GGCGAGATAC CGCCCCGGCA ATACGGCGCG
GGCAAGGTGA TCATCTGGGA CAAGGGCAGC TGGACGCCCA TCGGCGATCC GCGCAAGGGC
TACAGGGCGG GGCGCCTCAA ATTCGAGCTG CACGGCTACA AGCTGCGCGG CAAGTGGACG
CTGGTGCGCA TGCACGGCAA GGCCGACGAC AAGCAGGACG CGTGGCTCTT GATCAAGGAG
CACGACGAGT ACGCCCGCCC GGCCGCGGAG TTCAGCGTGG TCGACCAGTT CCCGGACAGC
GTGGCGCAGA TGCCGATGCC CGCTGCGGCG GTCTCGGCGC CCGCCGAGGC GCCGGCCGCA
CCGGCCAGAA AGCGCGGCGG CAAGGCATCG GCCAGCGGCA TGCCCGCCGA TGCGGTGAAG
GCCGCCATGC CGGCCAAGCT CTCGCCGCTG CTCGCCACGC TGGTCGACGG CCCGCCGCAC
GATCCCCAGA ACTGGCTGTA CGAGATCAAG TTCGACGGCT ACCGCCTGCT CGCGCGCATC
GATGCGAAGG GCGGCGTGCA GCTCGTCACG CGCAACGGCC ATGACTGGAG CAGCCGCATG
CCGCACCTGG TGCGCGCGAT CGAGCGCATG AAGCTCGCGC CCGGCTGGCT CGATGGCGAG
ATCGTGGTGC TCAACGAGTC CGGCGGCACG GACTTCCAGG CCCTGCAGAA CGCCTTCGAC
AGCGAGAACA CGCGCAACAT CGTCTACTTC CTGTTCGACC TGCCGTACTA CGGCGGCTTC
GATCTCACCG GCGTGCCGCT GGTCGAGCGG CGCGGCCTGC TGCAGGCGCT GCTGGCCAAG
GCGCCGCCCG AAATCCGCTT CAGCGAGATC TTCGATGCGC CGCCCGAGGA CATCGTGGCT
TCGGCCTGCA AGATCGGGCT CGAAGGCGTG ATCGGAAAGC GCAAGAACAG CACGTACGCC
TCGCGCCGCT CGCCCGACTG GATCAAGCTC AAGTGCTCGC AGCGGCAGGA GTTCGTCATC
GGCGGCTATA CCGATCCGAA GGGCTCGCGC GTGGGCATTG GCGCACTGCT GATCGGCGTG
CACGACGACA AGGGCGACCT CATCTACGCC GGCGCGGTGG GCGCGGGCTT CAACGGCCGG
ACGCTCGCCG ACATGCTCGA AAGATTGAAG CCGCTCGGCA TCGACAAGCG GCCGTTCAAG
AACCCGACCG AGAACGACCG ACGCGCGCAC TGGGTCAAGC CGGTGCTGCT GGCCGAGGTC
ACGTTTTCCG AATGGACGAA GGACGGCCAT GTGCGGCATC CGGTGTTCCA CAGCGTGCGC
TCGGACAAGC CCGCGAAGGC CATCGTCCGC GAGAAGCCGG TGCACCCGGC GGGCGCCGGC
CGCGAAGCGG AGGCTGAGCC CGAACCCGCC GCCACCATGC CCGCCAACTT CAAGGTCTCG
CATGCCGACC GCGTGGTCGA TCCGTCGACC GGCATCACCA AGGTGGAGGT GGTGCGCTTC
TACGGCCTGG TCGCGCCGCT GATGATGCCG CACCTGAAGG GCCGGCCCGT GTCGTTCGTG
CGCGCGCCGC AGGGCATCGG CGGCCAGCTG TTCTTCCAGA AGCACCTGGA GCTGGGGCAG
ATGGCCGGCG TGCGGCAGCT CGATGCGGCG CTGTGGCCCA AGCACCCCGA GCTGATCGAG
ATCGCGGGGC CGCTCGGGCT GCTGAGTGCG GCGCAGATGA ACGTCGTCGA GTTCCATACC
TGGAACGGCC TGAAGACGCT CATCGGCAAG CCCGACCGCA TGACCTTCGA CCTCGACCCG
GGTGAGGGCG TCGGCTGGCC CATGGTGCTG CAGGCCGCCG AGCTGATGCG CGTGGTGCTC
GACGAACTGG GCCTGGCGCC GTTCTGCAAG ACCAGCGGCG GCAAGGGGCT GCACGTGGTG
GTGCCGCTCA AGCGGCAGTA CGACTGGGAC ACCATCAAGG ATTTCTCGCA GGCCATCGTG
CGGCACATGG CGCGCACCCT GCCGCAGATG TTCGTCGCCA AGAGCGGGCC GGACAACCGC
GTCGGCCGCA TCTTCATCGA CTACCTGCGC AACGGCTTCG GCGCGACCAC CATCTGCGCC
TGGTCGGTGC GGGCGCGCCC CGGCATGGGG GTGTCGGTGC CGGTGGAATG GCAGGAGGTT
CCCACGCTCA CGAGCGGTGC GCAGTGGACC CTGCGGAACA TCCATGCACG GCTCGACCGC
GGCAACGATC CGTGGGCTGC GTATGCAAAG GCTGCAAAGA GTCCGGGAGC CGCAATGAAG
CTGCTGGGCT TCAGAGTTCG ATGA
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| Protein sequence | MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR IELDGAMKSW
AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA GKVIIWDKGS WTPIGDPRKG
YRAGRLKFEL HGYKLRGKWT LVRMHGKADD KQDAWLLIKE HDEYARPAAE FSVVDQFPDS
VAQMPMPAAA VSAPAEAPAA PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH
DPQNWLYEIK FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE
IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER RGLLQALLAK
APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA SRRSPDWIKL KCSQRQEFVI
GGYTDPKGSR VGIGALLIGV HDDKGDLIYA GAVGAGFNGR TLADMLERLK PLGIDKRPFK
NPTENDRRAH WVKPVLLAEV TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG
REAEAEPEPA ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV
RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA AQMNVVEFHT
WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL DELGLAPFCK TSGGKGLHVV
VPLKRQYDWD TIKDFSQAIV RHMARTLPQM FVAKSGPDNR VGRIFIDYLR NGFGATTICA
WSVRARPGMG VSVPVEWQEV PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK
LLGFRVR
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