| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1647 |
|---|
| Symbol | |
|---|
| ID | 7974715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1780769 |
|---|
| End bp | 1781527 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644792246 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002943563 |
|---|
| Protein GI | 239814653 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3967] Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.140341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA CAGGCAACAC GATCTTGATC ACCGGCGGCA CCTCGGGCAT CGGACTGGGC
TTGGCGCTGC GCTTTCATCA GGCGGGCAAC AAGGTCATTG TCGCGGGTCG ACGCAAAGAC
CTGCTCGACC AGATCACCAA TGAGCACCCG GGCATTGAAG CGCTCGAGCT CGACGTCGCA
GACGCCGCAT CCATCACCCG CGCGAGCAAA ACGGTGGCGA GCAAGTACCC CGAACTGAAC
GTACTGGTCA ACAACGCGGG CATCATGCTT TGGGAAGATC TTCTTGAGCC GACCTCCCTC
CAGATCGCCG AGGACACCGT CTCGGTCAAC CTGCTTGGCA CGATTCGGAT GGTCTACGCC
TTCTTGCCGC AACTGGTGGA CAAAAGCGAC GCGGTGATCA TGAACGTTAC GTCTTCGCTC
GCATTCGTTC CATTGCCGGC CACGCCCACC TACAACGCAA CGAAAGCCGC CCTTCACTCC
TTCACCGAGA GCCTGCGCAT CCAGGTGGCG GACGCCTCTG TCCAAGTGAT CGAAGTAGCG
CCACCGGGCG TGCGAACAAC GTTGCTGGGC CAGGAAAACG ACGAGCAGTC CATGCCGCTG
GAAGAATTTC TTTCAGAAAC CATGGCACTT CTGCGCGACG AGCCTGAGGC CCAGGAAATT
GTCGTAGAAC GCGCCAAGTT CATCCGGTAC GCAGAAGCCA ATGGCACGTA TGCCAGTGTC
CTGGGAATGC TCTCCGCCGT GAGCGCTTCA CGAAACTGA
|
|---|
| Protein sequence | MKFTGNTILI TGGTSGIGLG LALRFHQAGN KVIVAGRRKD LLDQITNEHP GIEALELDVA
DAASITRASK TVASKYPELN VLVNNAGIML WEDLLEPTSL QIAEDTVSVN LLGTIRMVYA
FLPQLVDKSD AVIMNVTSSL AFVPLPATPT YNATKAALHS FTESLRIQVA DASVQVIEVA
PPGVRTTLLG QENDEQSMPL EEFLSETMAL LRDEPEAQEI VVERAKFIRY AEANGTYASV
LGMLSAVSAS RN
|
|---|
| |