| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1637 |
|---|
| Symbol | |
|---|
| ID | 7974705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1769852 |
|---|
| End bp | 1770637 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792237 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_002943554 |
|---|
| Protein GI | 239814644 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTG CCACCTGGAA TGTCAATTCC CTGACCGCCC GCCTGCAGCA TGTGCTCGAC
TGGCTGATCG CCAACCCGGT CGACGTGCTG TGCCTGCAGG AACTCAAGAT GAGCGACGAC
AAGTTCCCGC TCGACGTGCT CAAGTCCGCC GGCTACGAGG CCGCCGTGTT CGGCCAGAAG
ACCTACAACG GCGTCGCCAT CCTGAGCCTC GCGCCGATGC GCGACGTGGC AAGGAACATC
GGCGGCTTCA CCGACGACCA GTCCCGCGTG ATCGCGGCCA CGGTCGAAAC GCCGGCGGGT
CCGCTGCGCA TCGTGAACGG CTACTTCGTC AACGGCCAGG CGCCGGGCAC CGACAAGTTC
GAATACAAGA TGGGCTGGCT GCGCGCGCTG CGCGAATGGC TGCGCGCCGA AATGGCGGCG
CATCCGAACC TGGTGCTTCT GGGCGACTTC AACATCGCGC CCGAAGACCG CGACAGCTTC
GACCCCGTGG GCCTGGCGGA AACCATCCAT CACACGACCG AGGAGCGCGA GCATTTCAAG
GCGCTGCTCC AGCTGGGCCT GGTCGACAGC TTCCGGCTCT TCGAGCAGCC CGAGAAAAGC
TTTTCGTGGT GGGACTACCG GATGCTCGGC TACCAGAAGA ACCGCGGCCT GCGCATCGAC
CACATCCTGG TGAGCGAGCC GCTGGTGCCG CGCGTCAAGG GCTGCATCAT CGACCGCGTG
CCGCGCAAGT GGGAAAAGCC GAGCGACCAC GCACCGGTGG TGCTCGATCT CGACCAGGGA
ATTTGA
|
|---|
| Protein sequence | MKIATWNVNS LTARLQHVLD WLIANPVDVL CLQELKMSDD KFPLDVLKSA GYEAAVFGQK
TYNGVAILSL APMRDVARNI GGFTDDQSRV IAATVETPAG PLRIVNGYFV NGQAPGTDKF
EYKMGWLRAL REWLRAEMAA HPNLVLLGDF NIAPEDRDSF DPVGLAETIH HTTEEREHFK
ALLQLGLVDS FRLFEQPEKS FSWWDYRMLG YQKNRGLRID HILVSEPLVP RVKGCIIDRV
PRKWEKPSDH APVVLDLDQG I
|
|---|
| |