| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1615 |
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| Symbol | |
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| ID | 7974844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1744140 |
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| End bp | 1746152 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792215 |
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| Product | bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase |
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| Protein accession | YP_002943532 |
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| Protein GI | 239814622 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
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| TIGRFAM ID | [TIGR00017] cytidylate kinase
[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCGA CGGCATTCCT CGACATTCCT GCGCTGGCCG GGGCATCGGG CACCGTGCGG
CTGCCGGGCT CCAAGAGCAT TTCGAACCGC GTGCTGCTGC TGGCCGCGCT GGCGAGCGGA
ACCACCACGG TCCACGACCT GCTCGATTCC GACGACACCC GCGTGATGCT GGATGCGCTG
CGCGCGCTCG GCTGCGGCAT CGATGCGGCC GGCAGCACGC TGCGCATCAC CGGCATCGGC
GGCCAGCTGA AGCCAGGCGG GCCGATGCTG CCGCTTTTCC TCGGCAACGC CGGCACCGCG
ATGCGTCCGC TGACCGCCGC GCTGTCGCTG CTCGGCGGCG AATTCGAATT GAGCGGCGTG
CCGCGCATGC ACGAGCGGCC GATCGGCGAC CTGGTCGATG CGCTGACCCA GCTCGGCTGC
CGCATCGACT ACCTGGGCAA CCCCGGCTAC CCGCCGCTGC GCATCCGCCC GGTCGATCAC
GGCGCGCTGG TGCTGGATGC GCCGATCCGC GTGCGCGGCG ATGTCTCGAG CCAGTTCCTG
ACCGCGCTGC TCCTCGCGCT GCCTCTCGCC GCCCGCAAGG ACATCGTGAT CGAGGTAGTC
GGCGAGCTGA TCTCCAAGCC CTACATCGAG ATCACGCTCA ACCTGCTGGC GCGCTTCGGC
ATTGCCGTGC AGCGCGAGGG CTGGGAGCGC TTCACCATCC CCGCGGGCAG CCGCTACAGC
TCGCCGGGCG ACATCCACGT CGAGGCCGAC GCTTCCTCTG CCAGCTATTT CATCGCGCTC
GGCGCCATTG CCACGGGTGC TTCCGGCCAG GACAGCATCC GGATCGAAGG CGTGGGCGCC
GATTCGATCC AGGGCGACAT CCGCTTCATC GAGGCGGCGC GGCAAATGGG CGCGCAGGTC
GACAGCGGGC CGAACTGGCT CGACGTGCGC CGCGGCGCCT GGCCGCTCAA GGCCATCGAC
CTGGACGCCA ACCACATCCC CGATGCCGCG ATGACGCTGG CCGTGATGGC GCTCTATGCC
GACGGCCCCA GCACCCTGCG CAACATCGCC AGCTGGCGGG TCAAGGAAAC CGACCGCATC
GACGCCATGG CCAACGAACT CCGGAAGCTC GGCGCCACTG TCGACTCCGG CCCCGATTTC
ATCCGGGTCC ATCCGCTGGA GCGCCCGGGC TGGCAGGCGG CAAGCATCCG CACCTACGAC
GACCACCGCG TGGCCATGTG CTTTTCGCTC GCGGCCTTCA ATCCGGCGGG CTTGCCGGTG
CGCATCCTGG AGCCGCACTG CGTCGCCAAG ACCTTCCCGG ACTATTTCGA GACGCTGTTC
TCGGTGGCCC AGGCGCCCGA GGTGCCGGTG ATCTGCATCG ACGGCCCCAC CGCCTCGGGC
AAGGGCACGC TCGCGGCCGA GGTGGCGCGC CTGCTGGGTT ACCACTACCT CGATTCAGGT
TCGCTCTACC GCGTGACCGG CCTGGCCATG CGGCGCGCCG GGCTCGGCGC CGAACCGCAG
CACGAGGCGC AGATCGCCGC CCTGGCGGCC GCCCTGCCAC TGCATTTCAC CGAGGGCAAG
GTGCTGCTGG GCGGCGAGGA CGTGAGCGAC GAAATCCGCA CCGAAGCCGC CGGCATGGAT
GCCTCCCGCG TCTCCACGCT TCCCGCGGTG CGCGCAGCGC TCCTGGCCCT GCAGCAGCGC
TTTCGGCAGC TCCCGGGGCT GGTCGCCGAC GGCCGCGACA TGGGCACCGT GATCTTCCCC
GACGCGGCGC TCAAGGTCTT TCTCACGGCC AGCGCCGCCC AGAGGGCCGA ACGCCGGCAT
AAGCAGTTGA TTTCAAAGGG TATTTCAACT ACACTTGACA GTCTTCGCTC CGACTTGGAA
GCGCGCGACG CCCGGGACTC GTCCCGCAGC GTCGCTCCGC TCAAGCCGGC GCAGGATGCC
CGCCACCTCG ACAACTCCCA GCTGTCCATC GAGCAATCGA TCGACCAGGT GCTGAACTGG
TGGCAGGAAA AACAGCCGTT CAAGCCCGCT TGA
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| Protein sequence | MFSTAFLDIP ALAGASGTVR LPGSKSISNR VLLLAALASG TTTVHDLLDS DDTRVMLDAL
RALGCGIDAA GSTLRITGIG GQLKPGGPML PLFLGNAGTA MRPLTAALSL LGGEFELSGV
PRMHERPIGD LVDALTQLGC RIDYLGNPGY PPLRIRPVDH GALVLDAPIR VRGDVSSQFL
TALLLALPLA ARKDIVIEVV GELISKPYIE ITLNLLARFG IAVQREGWER FTIPAGSRYS
SPGDIHVEAD ASSASYFIAL GAIATGASGQ DSIRIEGVGA DSIQGDIRFI EAARQMGAQV
DSGPNWLDVR RGAWPLKAID LDANHIPDAA MTLAVMALYA DGPSTLRNIA SWRVKETDRI
DAMANELRKL GATVDSGPDF IRVHPLERPG WQAASIRTYD DHRVAMCFSL AAFNPAGLPV
RILEPHCVAK TFPDYFETLF SVAQAPEVPV ICIDGPTASG KGTLAAEVAR LLGYHYLDSG
SLYRVTGLAM RRAGLGAEPQ HEAQIAALAA ALPLHFTEGK VLLGGEDVSD EIRTEAAGMD
ASRVSTLPAV RAALLALQQR FRQLPGLVAD GRDMGTVIFP DAALKVFLTA SAAQRAERRH
KQLISKGIST TLDSLRSDLE ARDARDSSRS VAPLKPAQDA RHLDNSQLSI EQSIDQVLNW
WQEKQPFKPA
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