| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1614 |
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| Symbol | rpsA |
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| ID | 7974843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1742222 |
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| End bp | 1743910 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644792214 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_002943531 |
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| Protein GI | 239814621 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAT CTTTTGCCGA CCTATTCGAA GAGTCCCTGA AGCGTTCCGA AATGCGCACC
GGCGAGGTCA TCACGGCCGA AGTCGTGCGC GTCGAACACA ACCACGTGGT GGTCAACGCC
GGCCTCAAGT CCGAAGCGTA TGTGCCGATC GAGGAGTTCA AGAACGACAA GGGCGAACTC
GAAGTCCAGG CCGGCGATTT CGTTTCCGTT GCCATCGGCA GCGTTGAAAA CGGCTACGGC
GACACCATCC TCTCTCGCGA CACCGCCAAG CGCCTCGCTT CGTGGCTCGC CCTGGAGAAG
GCCCTGGAAT CGGGCGACTT CGTCACCGGC ACCACCAGCG GCAAGGTCAA GGGCGGCCTC
ACGGTGCTCG TCAACGGCAT CCGCGCCTTC CTGCCGGGCT CGTTGATCGA CACGCGTCCG
ATCAAGGACC TGACGCCGTA CGAGAACAAG ACCCTCGAAT TCAAGGTCAT CAAGCTCGAC
CGCAAGCGCA ACAACGTCGT GCTGTCGCGC CGTGCCGTGG TCGAAGCCAG CATGGGCGAA
GAGCGCGCCA AGCTGATGGA AACCCTGAAG GAAGGCGCTG TTGTCCGCGG CGTGGTCAAG
AACATCACCG AATACGGTGC GTTCGTGGAC CTCGGCGGCA TCGACGGCCT GCTGCACATC
ACCGACATGG CATGGCGCCG TGTCCGCCAC CCGAGCGAAG TCGTTCAGGC CGGCCAGGAA
ATCACCGCCA AGATCCTCAA GTTCGACACC GAGAAGAACC GTGTCTCGCT GGGTCTGAAG
CAAATGGGCG ACGATCCGTG GATGGGCGTT TCGCGCCGCT ACCCGCAATC GACCCGCCTG
TTCGGCAAGG TCACGAACAT TGCCGACTAC GGCGCGTTCG TCGAACTCGA ACCCGGCATC
GAAGGCCTGG TGCACGTCTC CGAAATGGAC TGGACCAACA AGAACATCGC TCCGAACAAG
ATCGTCTCGC TGGGCGACGA AGTCGAAGTC ATGGTCCTCG AAATCGACGA AGACAAGCGC
CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAACCCGT GGCAAGAGTT CGCGCAGAAC
ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTC
GTGGGCCTGG CTGCCGGCAT CGACGGCCTG GTGCACCTGT CTGACCTCTC GTGGAACGAA
GCCGGCGAAA CCGCCGTTCG CAACTACAAG AAGGGCCAGG AAGTCGAAGC GATCGTGCTG
GCCGTCGACG TCGACCGCGA GCGCATCAGC CTGGGCATCA AGCAGCTCGA CAGCGACCCG
TTCACCACCT TCACCACGGT GAACGACAAG GGCCAGATCG TGACCGGCAA GGTCAAGACC
GTGGACGCCC GCGGCGCTGA GATCGACCTC GGCGAAGACA TCATCGGCTA CCTGCGTGCT
TCGGAAATCT CGCGCGACCG CGTCGAAGAT GCCCGCAACG TGCTGAAGGA AGGCGACGAA
GTCACCGCCA TCGTCGTGAA CGTGGATCGC AAGACCCGCA ACATCCAGCT GTCCATCAAG
CAGAAGGACA TGGTCGACGA ACAAGGCGCC ATGGCCAACC TGAGCCAGCA GTCGGCACGC
GAAAACGCGG GCACGACGAG CCTGGGCGCC CTGCTGCGCG CCAAGCTCGA CAACAACGAC
AGCAAGTAA
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| Protein sequence | MSESFADLFE ESLKRSEMRT GEVITAEVVR VEHNHVVVNA GLKSEAYVPI EEFKNDKGEL
EVQAGDFVSV AIGSVENGYG DTILSRDTAK RLASWLALEK ALESGDFVTG TTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP IKDLTPYENK TLEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGAVVRGVVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVQAGQE
ITAKILKFDT EKNRVSLGLK QMGDDPWMGV SRRYPQSTRL FGKVTNIADY GAFVELEPGI
EGLVHVSEMD WTNKNIAPNK IVSLGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAQN
TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE AGETAVRNYK KGQEVEAIVL
AVDVDRERIS LGIKQLDSDP FTTFTTVNDK GQIVTGKVKT VDARGAEIDL GEDIIGYLRA
SEISRDRVED ARNVLKEGDE VTAIVVNVDR KTRNIQLSIK QKDMVDEQGA MANLSQQSAR
ENAGTTSLGA LLRAKLDNND SK
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