| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1574 |
|---|
| Symbol | |
|---|
| ID | 7974803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1702595 |
|---|
| End bp | 1703191 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644792174 |
|---|
| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
|---|
| Protein accession | YP_002943491 |
|---|
| Protein GI | 239814581 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.803003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCC TGCTCAGATT TTCGCGCGCG GTCGATTGGC TCAATGGCCA GATCGGCAAG
TACGTGATCT GGCTCATCCT TGCATCCACC GTGATCAGCG GCGTCAATGC CGTGGTCCGG
AAGGTGTTCA ACGTCAGCTC CAACGCCTAT CTCGAAGTGC AGTGGTACCT GTTCGCCGCA
TCCTTCCTGA TTGCCGCGGG CTATACCCTC CTGAACCAGG AGCACGTGAA GATCGACGTG
ATCCTCAGCC GCCTGTCCAA GCGCGGCCAG ATCTGGGTCG ACATCATCGG CTTCAGCTTC
TTCCTCACGC CGGTGTGCCT GGCCATCCTC TGGTATGGCA TTCCGTTCTT CCTGCAGGGC
TATCGCTCGG GCGAGATGTC GAACAACGCC GGCGGCCTGA TCCGCTGGCC GATCTACGCC
ATGATCCCGC TGGGCTTCTC GCTGCTGATG CTCCAGGGCT GGTCCGAACT CATCAAGCGC
ATCGCGTTCC TGCAGGGCCG CATCGACGAC CCTACGCAAA AGCGCGACGA GAAAACCGCC
GAAGAAGAAC TGGCCGAGTC GATCCGCCGG CTCGCCGAAT CCAACGCCAA AGGCTGA
|
|---|
| Protein sequence | MNFLLRFSRA VDWLNGQIGK YVIWLILAST VISGVNAVVR KVFNVSSNAY LEVQWYLFAA
SFLIAAGYTL LNQEHVKIDV ILSRLSKRGQ IWVDIIGFSF FLTPVCLAIL WYGIPFFLQG
YRSGEMSNNA GGLIRWPIYA MIPLGFSLLM LQGWSELIKR IAFLQGRIDD PTQKRDEKTA
EEELAESIRR LAESNAKG
|
|---|
| |