| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1572 |
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| Symbol | |
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| ID | 7974801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1699600 |
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| End bp | 1700682 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792172 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002943489 |
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| Protein GI | 239814579 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGTC GTTCCCTCAT TAAAAACGCC GGCATTGCGG GCGTTCTGGC CGCCGGCATT
GCGCCCGCAG TTCATGCGCA GGCGGCCGTC CGCTGGCGCC TGGCGTCGAG CTTTCCCAAG
TCGCTCGACA CCATCTACGG CGGCGCGGAA GTCTTCGCCA AGGCGGTCAA GGCCATGTCG
GGCGGCAAGT TCGAAATCTC GGTCCATGCC GGCGGCGAGC TGATGCCTCC CTTCGGCGTG
GTGGACGGCG TGCAGAACGG TTCGGTCGAG ATGTGCCACA CCGTGCCTTA CTACTTCTAC
GGCAAGAACC CCGCGTTCGC GCTGGGCTCG GCCATTCCGT TCGGCCTGAA CTCGCGCCAG
ATGACCGCGT GGATGATGCA CGGCAACGGC CGCAAGCTCA TGAACGAGTT CTACGCCAAG
TACAGCATGG TGAGCTTCGC CGGCGGCAAC ACGGGCTGCC AGATGGGCGG CTGGTTCCGC
AAGGAAATCA AGTCCGTGGC GGATTTCAAG GGCATGAAGA TGCGCCTGGG CGGCGGCCTG
ATCGGCGAGG TCATGCAGAA GATGGGCGCC GTGCCGCAAA GCCTGCCGGG CGGCGAGATC
TACCAGGCAC TCGAAAAGGG CACCATCGAT GCCGCCGAGT GGGTGGGTCC GTACGACGAC
CAGAAGCTCG GCTTCAACAA GGTGGCGCCG TTCTACTACT ACCCCGGCTG GTGGGAAGGC
GGTCCGGAAG TGGACTTCTT CATCAACCAG AAGGCCATGG ACGGCCTCTC GGCCGAGAAC
AAGGCCATCG TGGAAGCCGC CGCGGCCGTG GCCTCGTCGG ACATGCTGGC CAAGTACGAC
GCGCTCAACC CGATCGCGCT CAAGCAGCTC GTGGCCGCCA AGACCAAGGT GCTGCCGTTC
TCGCAAGCCA TGATGGACGC CGCCTACAAG GCTTCGCTCG AGGTCTATGC CGAGAACGAC
GCCAAGAGCC CCGAGTGGAA GAAGATCTAC GCCGACTTCC GCAGCTTCCA GCGCGACCAG
GTGCTCTGGT TCCGTTTTGC GGAATCGCGC TTCGACTCGT TCATGTCCAC GCTCAAGCTC
TGA
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| Protein sequence | MDRRSLIKNA GIAGVLAAGI APAVHAQAAV RWRLASSFPK SLDTIYGGAE VFAKAVKAMS
GGKFEISVHA GGELMPPFGV VDGVQNGSVE MCHTVPYYFY GKNPAFALGS AIPFGLNSRQ
MTAWMMHGNG RKLMNEFYAK YSMVSFAGGN TGCQMGGWFR KEIKSVADFK GMKMRLGGGL
IGEVMQKMGA VPQSLPGGEI YQALEKGTID AAEWVGPYDD QKLGFNKVAP FYYYPGWWEG
GPEVDFFINQ KAMDGLSAEN KAIVEAAAAV ASSDMLAKYD ALNPIALKQL VAAKTKVLPF
SQAMMDAAYK ASLEVYAEND AKSPEWKKIY ADFRSFQRDQ VLWFRFAESR FDSFMSTLKL
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