Gene Vapar_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1560 
Symbol 
ID7974789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1686533 
End bp1687801 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content69% 
IMG OID644792160 
Productglutamate carboxypeptidase 
Protein accessionYP_002943477 
Protein GI239814567 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.400095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTGC ACTCGTCCTT CCTTGCCCTG CGGTCCGTGT CGCTGGCCTG CGGCCTCGCC 
CTTGGCGCCG CCGCCGCCGT GCACGCCGCG CCCGATGCCA AGCTGCTCGC CGCCGCCGAA
AAGGCGCAGC CCGCGGTGAT CGACAACCTC AAGGAAATGG TGCTGATCGA ATCGGGCAGC
CTCAACGTCG ACGGCCTGCT CAAGATGGCC GACGTGGTGG AAGCGCGCCT GAAGGCCGCG
GGCTTCAAGA CCGAGCGGCG CAAGGCCACG GCGGGCGCGG GCGCCGACAT CGTCATCGGC
ACCCTCAAGG GCACGGGCAA GCGCAGGATC ATGCTGCAGG GCCACATGGA CACGGTGTAC
GCCGCCGGCA TCCTGAACAG CCAGCCCTAC AAGGTCGATG GCAACCGCAT CTACGGGCCG
GGCATCGCGG ACGACAAGGG CGGGCTCGCG GTCATGATGG CTTCGCTGAA GATCCTGGCC
GATGCGGGCT GGCGCGACTA CGACACGCTC ACGGTGCTCA TGAACCCCGA CGAGGAAGTG
GGCTCGGTCG GCTCGGGCGA GCTCATCGCA ACCATGGCCG ACCAGCACGA CACGGTGCTG
TCCTTCGAGC CCACCGCCGC CAAGTCGGTG GCCAAGGGCG AATCGCTGCT GCTGGGCGCG
GCCGGCATCG CACAGGCCAC CCTCGACGTG AAGGGCCGCG CATCGCATGC GGGCGCCGCA
CCCGAGCTGG GCCGCAACGC GCTGTACGAG CTGTCGTACC AGCTGCTGCA GACCCGCGAC
GTGGCCAAGG ACATCCCCGG CGTGGCACTC AACTGGACCG TGGCGCGCGC CACCGGCCCG
ATCAACCAGA TCACCGAGAA GGCGCAGGCG CTCGGCGACA TCCGCATCAC GCAGCCCGGC
GCCGAGAAGA AGCTCGAAGC CGCGCTGCAG GCGAAGCTCG CGAGCGGCAA GCTGGTGCCC
GACACCGAGA CCACGCTCAA GGTGGAAGTG GGCCGCCCGG CTTTCGTGGC GGGCGAGAAG
GGCCGCGCGC TGGGCGAGAA GGCCCAGGCC ATCTACAAGG AGATCGACCG CGAGCTCGCG
CTCACGCCCA TGACCGGCGG CGGCACCGAT GCGGGCTATG CGGGCCGCTC CGGCAAGGCC
ACCGTGGTCG AGAGCTTCGG CCTCGCGGGC TTCGGCTATC ACGCACGCGA CGAATACATC
GAGGTCGACT CGATCGTGCC GCGCCTCTAT CTCGTCACTC GGCTGCTGAC GGAAATCGGC
AAGCAGTAA
 
Protein sequence
MNLHSSFLAL RSVSLACGLA LGAAAAVHAA PDAKLLAAAE KAQPAVIDNL KEMVLIESGS 
LNVDGLLKMA DVVEARLKAA GFKTERRKAT AGAGADIVIG TLKGTGKRRI MLQGHMDTVY
AAGILNSQPY KVDGNRIYGP GIADDKGGLA VMMASLKILA DAGWRDYDTL TVLMNPDEEV
GSVGSGELIA TMADQHDTVL SFEPTAAKSV AKGESLLLGA AGIAQATLDV KGRASHAGAA
PELGRNALYE LSYQLLQTRD VAKDIPGVAL NWTVARATGP INQITEKAQA LGDIRITQPG
AEKKLEAALQ AKLASGKLVP DTETTLKVEV GRPAFVAGEK GRALGEKAQA IYKEIDRELA
LTPMTGGGTD AGYAGRSGKA TVVESFGLAG FGYHARDEYI EVDSIVPRLY LVTRLLTEIG
KQ