| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1456 |
|---|
| Symbol | |
|---|
| ID | 7971284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1580895 |
|---|
| End bp | 1581746 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792054 |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_002943373 |
|---|
| Protein GI | 239814463 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2912] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA GCTTTCAGGT TCCCACGGCC CTGGCGTATT TCGAATCGCT GGTGCAGAGC
GACGAGCACT TTCCGCTGCT GGAGGCTGCC GCCAGCCTCG CGCAGGACGA ATACCCCGAC
CTCGACGTGC AGCAGGTGCT GGGCGACGTC GACCAGCTGC TCGCGCGCCT GAAGCGCCGG
CTGCCGGCCG ATGCCGCACC GCTCGCGCGG CTGCGCGCGC TCAACCAGTT CTTCTTCAAC
GACCTGAACT TCGGCGGCAA CGTCAACGAC TACTACGACC CCGACAACAG CTACCTGAAC
GCCGTGCTGC GCACGCGCCG CGGCATTCCC ATTTCGCTCG CGGTGCTGTG GATGGAACTC
GCACAGGGGC TGGGCCTGCA GGCGCGCGGC ATCGGCTTTC CGGGCCACTT CATGCTCAAG
GTCACGCTGC CGAAGGGGCA GGTGGTGATC GACCCCTTCA CCGGCAAGTC GCTCTCGCGC
GAAGAACTCG GCGAGCGGCT CGAGCCCTAC AAGCGCAGCA ACGGGCTGGT CGGCGATTTC
GACGTGCCGC TGGGCCTCTA CCTGCAGCCC GCCAGCTCGC GCGAGATCAT CGGGCGCATG
CTGCGCAACC TGAAGGAAGT GCACCGCGCG CAGGAAGACT GGCAGCGCGC CATCGCCGTG
CAGGACCGCC TGATCGCGCT GCTGCCCAAC GCCTGGGGCG AGTACCGCGA CCGCGGCATC
GCGCATGCCG AGCAGGGCAA CACCGCAGCC GCCGTGCGCG ACCTGGAAAC CTACCTCGCG
CATGCGGAAG ACGCGCTCGA CGTCGACGTC ATTGCAGAGC GCGTCGCGGC GCTGCGGCGC
GAATCCGACT GA
|
|---|
| Protein sequence | MTFSFQVPTA LAYFESLVQS DEHFPLLEAA ASLAQDEYPD LDVQQVLGDV DQLLARLKRR
LPADAAPLAR LRALNQFFFN DLNFGGNVND YYDPDNSYLN AVLRTRRGIP ISLAVLWMEL
AQGLGLQARG IGFPGHFMLK VTLPKGQVVI DPFTGKSLSR EELGERLEPY KRSNGLVGDF
DVPLGLYLQP ASSREIIGRM LRNLKEVHRA QEDWQRAIAV QDRLIALLPN AWGEYRDRGI
AHAEQGNTAA AVRDLETYLA HAEDALDVDV IAERVAALRR ESD
|
|---|
| |