| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1433 |
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| Symbol | |
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| ID | 7971261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1555381 |
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| End bp | 1556160 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792031 |
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| Product | trans-aconitate 2-methyltransferase |
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| Protein accession | YP_002943350 |
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| Protein GI | 239814440 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4106] Trans-aconitate methyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGACT GGAACCCCGC GCTCTACCGT CGCTACGAGG ACGAGCGCAC CCGCCCCGCA
CAGGAACTCC TGGCGCGGGT GCCGTTGCCG GAGGCGGCCC GCGTGGTCGA CCTCGGCTGC
GGCCCGGGCA ATTCCACCGA GCTGCTGGCC AACCGGTTCC CGACGGCGAA AGTCGTCGGA
ACCGACAACT CCGAAGCCAT GCTGGCGAGC GCGCGCGAAC GCCTGCCGCA GGCACGCTTC
GAGTTGAGCG ACATCGCGAC CTGGGCGCCG CAAGACCAAG CGCCCGACCT CATTTACGCC
AACGCAGCCC TGCAGTGGGT GCCGGATCAC GAGCAGCTGA TCCCGCGCCT GTTCGCTGCG
CTGGCCCCCG GTGGCGTGCT CGCCATCCAG ATGCCCGACA ACCGCGAGGA GCCCACGCAT
CGCCTGATGC GCGCCGTGGC GGCCGAGGCG CCCTGGGCCG AGCCCATCGG CAATGCCGAC
CGGCTGCGCA CCTTGCTGCT GCCGCTCGGC GGCTACTACG ACCTGCTCGC GCCCGCCGCG
GCCAGGGTCG ATGTCTGGCA CACCATCTAC CAGCACCCCA TGGCCGATGC CGCGGCCATC
GTCGAGTGGG TGCGCGGCAC GGGGCTCAAG CCCTTCGTCG ACCGCCTGCC GGCCGACCTG
CAGGCCAGCT ACCTGGCCGA ATACGAGCGC CGCGTGGACC AGGCCTATCC TGTGCGCACC
GACGGCAAGC GGCTGCTCGC CTTCCCGCGC ATGTTCATCG TGGCGCAGAA AAAAGCATGA
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| Protein sequence | MLDWNPALYR RYEDERTRPA QELLARVPLP EAARVVDLGC GPGNSTELLA NRFPTAKVVG
TDNSEAMLAS ARERLPQARF ELSDIATWAP QDQAPDLIYA NAALQWVPDH EQLIPRLFAA
LAPGGVLAIQ MPDNREEPTH RLMRAVAAEA PWAEPIGNAD RLRTLLLPLG GYYDLLAPAA
ARVDVWHTIY QHPMADAAAI VEWVRGTGLK PFVDRLPADL QASYLAEYER RVDQAYPVRT
DGKRLLAFPR MFIVAQKKA
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