| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1428 |
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| Symbol | |
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| ID | 7971256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1550571 |
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| End bp | 1552379 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792026 |
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| Product | succinate dehydrogenase or fumarate reductase, flavoprotein subunit |
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| Protein accession | YP_002943345 |
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| Protein GI | 239814435 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTACA CAAAAGAACA AATCACCAAG CGCAAGTTCG ACGTCGTGAT CGTCGGTGCC
GGCGGCTCCG GCATGCGCGC CTCGCTGCAG CTGGCCCGCG CGGGCCTGAA CGTGGCGGTG
CTCTCCAAGG TGTTCCCCAC GCGTTCGCAC ACCGTTGCGG CCCAAGGCGG CGTGGGCGCA
TCGCTCGGCA ACATGAGCGA GGACAACTGG CACTACCACT TCTACGACAC GATCAAGGGT
TCCGACTGGC TCGGCGACCA GGACGCGATC GAGTTCATGT GCCGCGAAGC CCCGAAGGTC
GTGTACGAGC TCGAGCACTT CGGCATGCCC TTCGACCGCA ACCCCGACGG CACGATCTAC
CAGCGCCCGT TCGGCGGCCA CACGGCCAAC TACGGCGAGA AGCCCGTGCA GCGCGCCTGC
GCCGCGGCCG ACCGCACCGG CCATGCGATG CTGCACACGC TCTACCAGAA GAACGTCGAG
GCCCGCACCC AGTTCTTCGT CGAGTGGATG GCGCTCGACC TGATCCGCGA CGCCGAAGGC
GACGTGGTCG GCGTGACGGC GCTCGAAATG GAAACCGGCG ACCTGCACAT CCTGCAGGCC
AAGACCGTGC TGCTGGCCAC CGGCGGCGCG GGCCGCATCT TCCAGGCCTC CACCAATGCC
TTCATCAACA CCGGCGACGG CCTGGGCATG GCCGCGCGTT CGGGCATTCC GCTGCAGGAC
ATGGAGTTCT GGCAGTTCCA CCCGACCGGC GTGGCCGGCG CCGGCGTGCT GCTGACCGAA
GGCTGCCGCG GCGAAGGCGC GATCCTGCTC AACAGCAACG GCGAGCGCTT CATGGAGCGC
TATGCGCCCA CGCTGAAGGA CCTGGCGCCG CGCGACTTCG TCTCGCGCTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CTGCGGCCCC AACAAGGACT ACGTGCTGCT GAAGCTCGAC
CACCTCGGTG CCGAGACCAT CCACAAGCGC CTGCCCTCGG TGTATGAAAT TGGCGTGAAC
TTCGCCAACG TCGACATCAC GAAGGAGCCG ATCCCCGTGG TGCCCACCAT CCACTACCAG
ATGGGCGGCA TCCCGACCAA CATCAACGGC CAGGTCGTGG TGCAGCAGGG CGAGCAGAAC
AGCGCCGTGG TGAACGGCCT CTACGCGGTG GGCGAATGCT CCTGCGTGAG CGTGCACGGC
GCCAACCGCC TGGGCACCAA TTCGCTGCTC GACCTGCTGG TGTTCGGCCG CGCGGCCGGC
AACCACATCG TCGAGTTCAA CGACAAGCTC AAGGAACACA AGCCGCTGCC GGCCGATGCC
GCCGACCGCA CGCTGGAGCG CCTGAACCGC CTCGAGGCCG CCACCGGCGG CGAGTATGCA
CAGGACGTGG CGGGCGAGAT CCGCGCCGTC ATGCAGCAGC ACGCCGCCGT GTTCCGCAAG
CAGGCCTCGA TGGACGAAGG CGTCGTCAAG ATCGCCGCCG TGCGCGAACG CGTCAACGCC
ATTGGCCTGA AGGACAAGTC GAAGGTGTTC AACACCGCGC GCATCGAGGC GCTCGAAGTC
GACAACCTGA TCGAAGTGGC GCAGGCCACC ATGGTCTCGG CCGCCGCCCG CAAGGAATGC
CGCGGCGCGC ACACGGTCGA GGACTACGAA CGCCCGGCCG ACGACCCGGT CGCGCCGCTC
GGCCGCGACG ACGCCAACTG GATGAAGCAC ACGCTCTGGT ACAGCCAGGA CAACCGCCTC
TCCTACAAGC CGGTCAACCT CAAGCCGCTG ACGGTCGACT CCGTTCCTCC CAAGGTCCGT
ACGTTCTAA
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| Protein sequence | MTYTKEQITK RKFDVVIVGA GGSGMRASLQ LARAGLNVAV LSKVFPTRSH TVAAQGGVGA
SLGNMSEDNW HYHFYDTIKG SDWLGDQDAI EFMCREAPKV VYELEHFGMP FDRNPDGTIY
QRPFGGHTAN YGEKPVQRAC AAADRTGHAM LHTLYQKNVE ARTQFFVEWM ALDLIRDAEG
DVVGVTALEM ETGDLHILQA KTVLLATGGA GRIFQASTNA FINTGDGLGM AARSGIPLQD
MEFWQFHPTG VAGAGVLLTE GCRGEGAILL NSNGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGCGP NKDYVLLKLD HLGAETIHKR LPSVYEIGVN FANVDITKEP IPVVPTIHYQ
MGGIPTNING QVVVQQGEQN SAVVNGLYAV GECSCVSVHG ANRLGTNSLL DLLVFGRAAG
NHIVEFNDKL KEHKPLPADA ADRTLERLNR LEAATGGEYA QDVAGEIRAV MQQHAAVFRK
QASMDEGVVK IAAVRERVNA IGLKDKSKVF NTARIEALEV DNLIEVAQAT MVSAAARKEC
RGAHTVEDYE RPADDPVAPL GRDDANWMKH TLWYSQDNRL SYKPVNLKPL TVDSVPPKVR
TF
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