| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1420 |
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| Symbol | |
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| ID | 7971248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1543482 |
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| End bp | 1544570 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792018 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_002943337 |
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| Protein GI | 239814427 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCG CAGTTCTCCC GGGCGACGGC ATCGGCACCG AAATCGTGGC CGAAGCCATC
CGCGTGCTCG ACGCGCTCGA CCTCTCCTTC GAGATGGAAA CCGCGCTGGT CGGCGGCGCG
GCCTACGAGG CCCACGGCCA CCCGCTGCCC GAAGCCACGC TCAAGCTCGC CAAGGAAGCC
GATGCAGTGC TGTTCGGTGC GGTCGGCGAC TGGAAGTACG ACAAGCTCGA CCGCCCGCTG
CGCCCCGAGC AGGCCATCCT GGGCCTGCGC AAGAACCTGG GTCTGTTCGC GAACTTCCGC
CCGGCCATCT GCTACGAGCA GCTGGTGGGC GCCTCGAGCC TCAAGCCCGA GCTGATTGCG
GGCCTGGACA TCCTCATCAT CCGCGAGCTC ACCGGCGACA TCTACTTCGG CCAGCCGCGC
GGCCGCCGCA CGGCCGTCGA CGGGCATTTC CCGGGTGCCG ACGAAGCCTT CGACACCATG
CGCTACTCGC GCCCCGAGGT CGAGCGCATC GCCCGCGTGG CTTTCGAGGC CGCGCGCAAG
CGCAGCAAGC GCGTGACCAG CGTCGACAAG GCCAACGTGC TGGAGACCTT CCAGTTCTGG
AAGGACATCG TGACCGAGGT GCACAAGGAC TATCCGGACA TCGAGCTCGA CCACATGTAC
GTCGACAACG CGGCCATGCA GCTCGTGAAG GCGCCCAAGA AGTTCGACGT GATCGTCACC
GGCAACATGT TCGGCGACAT CCTCTCGGAC GAGGCCGCCA TGCTCACCGG CTCCATCGGC
ATGCTGCCCT CGGCGTCGCT CAATTCGAGC AACCAGGGCC TGTACGAGCC CAGCCACGGC
AGCGCACCCG ACATTGCCGG CAAAGGGGTT GCCAATCCAT TGGCTACAAT ACTGTCCGCT
GCCATGATGC TCCGTTTTTC ACTCAACCAA GCCGAAGCTG CCGACCGGAT CGAGTCGGCG
GTCAAGCACG TGCTCGCCTC CGGGCTGCGC ACCGGTGACA TCTGGTCAGA AGGCACGAAG
CGCGTCGGCA CCCGCGAAAT GGGCGACGCG GTTGTTGCAG CAATCACCAA AAAGACGATT
ACCGGCTAA
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| Protein sequence | MKIAVLPGDG IGTEIVAEAI RVLDALDLSF EMETALVGGA AYEAHGHPLP EATLKLAKEA
DAVLFGAVGD WKYDKLDRPL RPEQAILGLR KNLGLFANFR PAICYEQLVG ASSLKPELIA
GLDILIIREL TGDIYFGQPR GRRTAVDGHF PGADEAFDTM RYSRPEVERI ARVAFEAARK
RSKRVTSVDK ANVLETFQFW KDIVTEVHKD YPDIELDHMY VDNAAMQLVK APKKFDVIVT
GNMFGDILSD EAAMLTGSIG MLPSASLNSS NQGLYEPSHG SAPDIAGKGV ANPLATILSA
AMMLRFSLNQ AEAADRIESA VKHVLASGLR TGDIWSEGTK RVGTREMGDA VVAAITKKTI
TG
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