Gene Vapar_1402 details

Gene Information

• Locus tag: Vapar_1402
• Symbol: rnc
• ID: 7971230
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1525082
• End bp: 1525768
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644792000
• Product: ribonuclease III
• Protein accession: YP_002943319
• Protein GI: 239814409
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.922239
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACGGCG GCCTCACGGC GCTGCAGGAG CGCCTCAAGC ATTCGTTCTC CGACACGCGG 
CTGCTCCAGC TCGCGCTCAC GCACCGCAGT TTTTCGGCCG ACCACAACGA GCGCCTCGAA 
TTTCTCGGCG ACTCGGTGCT CAACCTCGCG GTCTCGCACC TGCTCTACAC CCGCCTCTCG 
GCCCTGCCCG AGGGCGACCT GTCGCGCGTG CGGGCCAACC TGGTCAAGCA GGACACCCTG 
CACCGCCTGG CGCTGGAACT GCAGCTGTCG CCGCTGCTGC GGCTCGGCGA GGGCGAGGCG 
CGCTCCGGCG GGCCCAACCG GCCCTCGATC CTGGCCGACG CGCTCGAGGC GCTGATCGGC 
GCGGTCTACC TCGACGCCGG CTTTTCGGCC GCCGAGGCGC TGGTGCGGCG GCTCTACGAA 
TCGGTCGAGA TCAATCCGCG CATGGACGCG GTGGCCAAGG ATCCGAAGAC CGAATTGCAG 
GAATGGCTGC AGGGTCACAA AATGAAGCTG CCGGTGTACC GCGTGGCGGC CACGCTCGGC 
GCAGCGCACA AGCAGACCTT CGATGTCGAG TGCGAGGTGC CGGAGCTGGG CCTGCGCGAA 
CGCGGCATCG GTGGTTCGCG GCGCGCCGGC GAGCAGGCTG CCGCGGCGGC CATGTTGATC 
CGGCTCAAGG CACGCGGGGC CGCGTGA 

 

Protein sequence

MDGGLTALQE RLKHSFSDTR LLQLALTHRS FSADHNERLE FLGDSVLNLA VSHLLYTRLS 
ALPEGDLSRV RANLVKQDTL HRLALELQLS PLLRLGEGEA RSGGPNRPSI LADALEALIG 
AVYLDAGFSA AEALVRRLYE SVEINPRMDA VAKDPKTELQ EWLQGHKMKL PVYRVAATLG 
AAHKQTFDVE CEVPELGLRE RGIGGSRRAG EQAAAAAMLI RLKARGAA