Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1386 |
Symbol | |
ID | 7971214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1510331 |
End bp | 1510888 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644791984 |
Product | protein of unknown function DUF177 |
Protein accession | YP_002943303 |
Protein GI | 239814393 |
COG category | [R] General function prediction only |
COG ID | [COG1399] Predicted metal-binding, possibly nucleic acid-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAGAG AATTTGCCCC CCAACGGCTC GACGTGGCCG GCTTTGCCGC CGCTGCCGCC ACCCTTGGCG CCACCGACCC GGTGCCCAAC TATGTGCGCC TTGCCGCCGA ACTGGCGGCC CCGGCGCCCG ATGCCGTGGT CCGCTGGACG GCGACCGGCG AAGAGCGCCC GGGCGCCGAT GGCAAAGCCG TGCCCTGGCT CCATCTGGAA GCCGACGCGA CCGTGCCGCT GACCTGCCAG CGCTGCCTGA CGCCTGTGGA GACGCCATTG GTGGTGGACC GCTGGTTCCG TTTCGTCGCC GACGAGGCGA CGGCGGAAGC CGAAGACGAG GAATCCGAGG AAGACCTGCT CGTCGTGAGC CGGGACTTCG ACCTGCCCAC CCTGATCGAA GACGAACTCC TGATGGAGAT TCCCGTCATG CCCGTGCACG AGGTCTGCCC GGTCCCGGTG CGGCTCTCGT CCAGCGACGA CGACTTCCAG GCGGCCGAAG AGGCCAAGCC GAACCCTTTC GCGGTGCTCG GGGCGTTGCG TTCGCGCAAG CCGGAAGAGG GCAAGTAG
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Protein sequence | MKREFAPQRL DVAGFAAAAA TLGATDPVPN YVRLAAELAA PAPDAVVRWT ATGEERPGAD GKAVPWLHLE ADATVPLTCQ RCLTPVETPL VVDRWFRFVA DEATAEAEDE ESEEDLLVVS RDFDLPTLIE DELLMEIPVM PVHEVCPVPV RLSSSDDDFQ AAEEAKPNPF AVLGALRSRK PEEGK
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